{"datasetrec":{"DasID":4688,"Acronym":null,"StandardTitle":"LifeWatch observatory data: phytoplankton observations by FlowCam imaging in the Belgian Part of the North Sea","OrigTitle":null,"OrigTitleLangID":15,"OrigTitleLangCode":"en","OrigTitleLang":"English","OrigTitleLangNL":"Engels","VersionName":null,"ContactEmail":null,"VersionDate":null,"VersionDay":null,"VersionMonth":null,"VersionYear":null,"SizeReference":null,"EngAbstract":"In the framework of the Lifewatch marine observatory a number of fixed stations in the Belgian Part of the North Sea (BPNS) are visited on a monthly or seasonal basis using RV Simon Stevin. A grid of nine stations covers the coastal zone and are sampled monthly. Eight additional stations, located further at sea, are sampled on a seasonal basis. Samples are taken using a 55\u00b5m mesh size Apstein net and fixed in Lugol's iodine solution. In the lab, the samples are processed using a VS-4 FlowCAM model at 4X magnification, size range imaged is 55-300\u00b5m. The identification of the image data is done with the use of a classifier and followed by a manual validation step.  Since May 2017, this dataset provides micro- and phytoplankton observations, mainly covering diatoms, dinoflagellates and cilliates, for the Belgian Part of the North Sea (BPNS).","EngDescr":"Taxonomic disclaimer: The blooms of Rhizosolenia and Bellerochea were flagged due to their extreme nature, which can lead to biased density estimates during these bloom periods. These taxa, when blooming outside their typical seasons, can skew results, although abundances remain unaffected. Additionally, the sampling methods, such as net sampling and prefilters, inherently under-sample taxa near the 300\u00b5m threshold, further contributing to the need for flagging these extreme events. It especially relates to samples 2021 07 120 (Rhizosolenia, Long (chained) diatom) and 2022 08 130 (Bellerochea en Rhizosolenia)","OrigAbstract":null,"OrigDescr":null,"Comments":null,"ReleaseDate":"Dec 23 2019 12:00AM","ReleaseDate0":"2019-12-23","OrigDescrLang":null,"EmbargoDate":null,"OrigDescrLangNL":null,"OrigLangCode":null,"OrigLangCodeExtended":null,"OrigLangID":null,"DescrCompFlag":0,"DescrTransFlag":0,"Citation":"Lagaisse, R., Mortelmans J., Muyle, J., Amadei Mart\u00ednez, L., Deneudt, K. 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This is the most accommodating of licenses offered. Recommended for maximum dissemination and use of licensed materials.","Lineage":"Prior to publication data undergo quality control checked which are described in https:\/\/github.com\/EMODnet\/EMODnetBiocheck?tab=readme-ov-file#understanding-the-output","AccConID":21,"GBIF_UUID":"0ba43f1c-9dc7-4d49-ae90-60d47fd290f3"},"dois":[{"DOIID":1290,"PublicationYear":2026,"DOI":"10.14284\/774","Citation":"Flanders Marine Institute (VLIZ), Belgium (2026): LifeWatch observatory data: phytoplankton observations by FlowCam imaging in the Belgian Part of the North Sea.","MDAID":"VLIZ_00000321_695b7bd864f4f242860577","Moratorium":0,"MDAURL":"https:\/\/mda.vliz.be\/directlink.php?fid=VLIZ_00000321_695b7bd864f4f242860577","CurrentDOI":1,"Active":1,"URL":null,"downloadURL":"https:\/\/mda.vliz.be\/download.php?file=VLIZ_00000321_695b7bd864f4f242860577"},{"DOIID":1238,"PublicationYear":2025,"DOI":"10.14284\/760","Citation":"Flanders Marine Institute (VLIZ), Belgium (2025): LifeWatch observatory data: 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The identification of the image data is done with the use of a classifier and followed by a manual validation step. These dataset comprises the full annotated image dataset which can be sampled for training of convolutional neural networks.&nbsp;<\/p>","License":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/","StandardTitle":"LifeWatch observatory data: phytoplankton annotated image library by FlowCam imaging for the Belgian part of the North Sea.","doi":null,"vlizDoi":"10.14284\/680"},{"DasID":8645,"Acronym":null,"EngAbstract":"<p>The images were collected in the framework of the Belgian Lifewatch Research Infrastructure. During multidisciplinary campaigns, a number of fixed stations in the Belgian Part of the North Sea (BPNS) are visited on a monthly (onshore stations) or seasonal (offshore stations) basis. Samples are taken using a 55\u00b5m mesh size Apstein net and fixed in Lugol's iodine solution. In the lab, the samples are processed using a VS-4 FlowCAM model at 4X magnification targeting a particle size range of 55-300\u00b5m. The identification of the image data is done with the use of a CNN and followed by a manual validation step. Since May 2017, this dataset has provided micro- and phytoplankton observations, mainly covering diatoms, dinoflagellates and cilliates, for the Belgian Part of the North Sea (BPNS).<\/p><p>&nbsp;<\/p><p>This dataset comprises a trainings datasplit of 337,613 images distributed across 95 classes, with each class containing a minimum of 100 and a maximum of 10,000 images. The goal of this dataset is to be able to facilitate model training, here we have organized the data into a standard split, with 80% allocated for training, 10% for validation, and another 10% for testing purposes. This dataset structure ensures a balanced representation and supports scientific rigor in subsequent analyses.<\/p>","License":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/","StandardTitle":"LifeWatch observatory data: phytoplankton annotated trainingset by FlowCam imaging in the Belgian Part of the North Sea","doi":"https:\/\/zenodo.org\/records\/10554845","vlizDoi":null}],"othrel":null,"othrelrev":[{"DasID":1510,"Acronym":"EurOBIS","StandardTitle":"European Ocean Biodiversity Information System","Relation":"Published dataset","RelationY":"Published in","RelID":13,"doi":null,"vlizDoi":null},{"DasID":6587,"Acronym":null,"StandardTitle":"Presence\/Absence maps of phytoplankton in the Greater North Sea","Relation":"Partial Source DataSet","RelationY":"Partly included 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LifeWatch Belgium: FlowCam sampling and lab protocol for imaging microphytoplankton in the Belgian part of the North Sea. Flanders Marine Institute: Oostende. 10 pp. <a href=\"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1\" target=\"_blank\">https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1<\/a>","RR":"<b>Lagaisse, R.<\/b> (2024). LifeWatch Belgium: FlowCam sampling and lab protocol for imaging microphytoplankton in the Belgian part of the North Sea. Flanders Marine Institute: Oostende. 10 pp. <a href=\"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1\" target=\"_blank\">https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1<\/a>","4":"LifeWatch Belgium: FlowCam sampling and lab protocol for imaging microphytoplankton in the Belgian part of the North Sea","StT":"LifeWatch Belgium: FlowCam sampling and lab protocol for imaging microphytoplankton in the Belgian part of the North Sea","5":"Lagaisse, R.","RSA":"Lagaisse, R.","6":"Gebaseerd op deze dataset","DutchTerm":"Gebaseerd op deze dataset","7":null,"AnaDate":null,"8":2024,"MonDate":2024,"9":". Flanders Marine Institute: Oostende.  10 pp. <a href=\"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1\" target=\"_blank\">https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1<\/a>","":". Flanders Marine Institute: Oostende.  10 pp. <a href=\"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1\" target=\"_blank\">https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1<\/a>","10":"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1","doi":"https:\/\/dx.doi.org\/10.17504\/protocols.io.6qpvr8e6zlmk\/v1"},{"0":393213,"BRefID":393213,"1":"Based on this dataset","Relation":"Based on this dataset","2":2,"RelationID":2,"3":"<b>Perneel, M. <i>et al.<\/i><\/b> (2024). Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea. <i>mBio Online first(8)<\/i>: 1-17. <a href=\"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24\" target=\"_blank\">https:\/\/dx.doi.org\/10.1128\/mbio.00383-24<\/a>","RR":"<b>Perneel, M. <i>et al.<\/i><\/b> (2024). Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea. <i>mBio Online first(8)<\/i>: 1-17. <a href=\"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24\" target=\"_blank\">https:\/\/dx.doi.org\/10.1128\/mbio.00383-24<\/a>","4":"Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea","StT":"Seasonal metabolic dynamics of microeukaryotic plankton: A year-long metatranscriptomic study in a temperate sea","5":"Perneel, M.; Lagaisse, R.; Mortelmans, J.; Maere, S.; Habl\u00fctzel, P.","RSA":"Perneel, M.; Lagaisse, R.; Mortelmans, J.; Maere, S.; Habl\u00fctzel, P.","6":"Gebaseerd op deze dataset","DutchTerm":"Gebaseerd op deze dataset","7":2024,"AnaDate":2024,"8":null,"MonDate":null,"9":". <i>mBio Online first(8)<\/i>: 1-17. <a href=\"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24\" target=\"_blank\">https:\/\/dx.doi.org\/10.1128\/mbio.00383-24<\/a>","":". <i>mBio Online first(8)<\/i>: 1-17. <a href=\"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24\" target=\"_blank\">https:\/\/dx.doi.org\/10.1128\/mbio.00383-24<\/a>","10":"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24","doi":"https:\/\/dx.doi.org\/10.1128\/mbio.00383-24"},{"0":350122,"BRefID":350122,"1":"Based on this dataset","Relation":"Based on this dataset","2":2,"RelationID":2,"3":"<b>Amadei Mart\u00ednez, L. <i>et al.<\/i><\/b> (2022). Corrigendum to \"LifeWatch observatory data: phytoplankton observations in the Belgian Part of the North Sea\". <i>Biodiversity Data Journal 10<\/i>: e81208","RR":"<b>Amadei Mart\u00ednez, L. <i>et al.<\/i><\/b> (2022). 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Oceanography,<\/i> Suppl. 34(4): pp. 20-25. <a href=\"https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09\" target=\"_blank\">https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09<\/a>","4":"Exploring new technologies for plankton observations and monitoring of ocean health","StT":"Exploring new technologies for plankton observations and monitoring of ocean health","5":"Habl\u00fctzel, P.I.; Rombouts, I.; Dillen, N.; Lagaisse, R.; Mortelmans, J.; Ollevier, A.; Perneel, M.; Deneudt, K.","RSA":"Habl\u00fctzel, P.I.; Rombouts, I.; Dillen, N.; Lagaisse, R.; Mortelmans, J.; Ollevier, A.; Perneel, M.; Deneudt, K.","6":"Gebaseerd op deze dataset","DutchTerm":"Gebaseerd op deze dataset","7":2021,"AnaDate":2021,"8":null,"MonDate":null,"9":", <b><i>in<\/i><\/b>: Kappel, E.S. <i>et al.<\/i> <i>Frontiers in ocean observing: Documenting ecosystems, understanding environmental changes, forecasting hazards. Oceanography,<\/i> Suppl. 34(4): pp. 20-25. <a href=\"https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09\" target=\"_blank\">https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09<\/a>","":", <b><i>in<\/i><\/b>: Kappel, E.S. <i>et al.<\/i> <i>Frontiers in ocean observing: Documenting ecosystems, understanding environmental changes, forecasting hazards. Oceanography,<\/i> Suppl. 34(4): pp. 20-25. <a href=\"https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09\" target=\"_blank\">https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09<\/a>","10":"https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09","doi":"https:\/\/dx.doi.org\/10.5670\/oceanog.2021.supplement.02-09"},{"0":332095,"BRefID":332095,"1":"Based on this dataset","Relation":"Based on this dataset","2":2,"RelationID":2,"3":"<b>Amadei Mart\u00ednez, L. <i>et al.<\/i><\/b> (2020). LifeWatch observatory data: phytoplankton observations in the Belgian Part of the North Sea. <i>Biodiversity Data Journal 8<\/i>: e57236. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236<\/a>","RR":"<b>Amadei Mart\u00ednez, L. <i>et al.<\/i><\/b> (2020). LifeWatch observatory data: phytoplankton observations in the Belgian Part of the North Sea. <i>Biodiversity Data Journal 8<\/i>: e57236. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236<\/a>","4":"LifeWatch observatory data: phytoplankton observations in the Belgian Part of the North Sea","StT":"LifeWatch observatory data: phytoplankton observations in the Belgian Part of the North Sea","5":"Amadei Mart\u00ednez, L.; Mortelmans, J.; Dillen, N.; Debusschere, E.; Deneudt, K.","RSA":"Amadei Mart\u00ednez, L.; Mortelmans, J.; Dillen, N.; Debusschere, E.; Deneudt, K.","6":"Gebaseerd op deze dataset","DutchTerm":"Gebaseerd op deze dataset","7":2020,"AnaDate":2020,"8":null,"MonDate":null,"9":". <i>Biodiversity Data Journal 8<\/i>: e57236. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236<\/a>","":". <i>Biodiversity Data Journal 8<\/i>: e57236. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236<\/a>","10":"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236","doi":"https:\/\/dx.doi.org\/10.3897\/bdj.8.e57236"}],"urls":[{"URL":"https:\/\/emodnet.ec.europa.eu\/geonetwork\/srv\/eng\/catalog.search#\/metadata\/6d617269-6e65-696e-666f-000000004688","externalID":null,"URLTypeCode":null,"URLType":"Dataset information","URLTypID":17,"downloadURL":null,"FileName":null},{"URL":"https:\/\/emodnet.ec.europa.eu\/geoviewer\/?layers=6d617269-6e65-696e-666f-000000001510:1:1&basemap=ebwbl&active=12639&bounds=-12530604,-7655416,12530604,7655416&filters=12639:datasetid__datasetid=4688--&projection=EPSG:3857","externalID":null,"URLTypeCode":null,"URLType":"Online dataset","URLTypID":19,"downloadURL":null,"FileName":null},{"URL":"https:\/\/eurobis.org\/id\/dataprovider\/4688","externalID":null,"URLTypeCode":null,"URLType":"LOD Dataset","URLTypID":52,"downloadURL":null,"FileName":null},{"URL":"https:\/\/www.eurobis.org\/toolbox\/en\/download\/occurrence\/dataset\/4688","externalID":"4688","URLTypeCode":null,"URLType":"Online dataset","URLTypID":19,"downloadURL":null,"FileName":null},{"URL":"https:\/\/www.gbif.org\/dataset\/0ba43f1c-9dc7-4d49-ae90-60d47fd290f3","externalID":"0ba43f1c-9dc7-4d49-ae90-60d47fd290f3","URLTypeCode":"GBIF_UUID","URLType":"GBIF dataset","URLTypID":43,"downloadURL":null,"FileName":null},{"URL":"https:\/\/geo.vliz.be\/geoserver\/Dataportal\/wfs?service=wfs&version=1.1.0&typeName=eurobis-obisenv_full&request=GetFeature&outputFormat=text%2Fcsv&viewParams=datasetid%3A4688","externalID":null,"URLTypeCode":null,"URLType":"INSPIRE Download Service (WFS)","URLTypID":50,"downloadURL":null,"FileName":null},{"URL":"https:\/\/geo.vliz.be\/geoserver\/wms?service=WMS&request=getCapabilities&layer=Dataportal:eurobis_rasters-obisenv","externalID":null,"URLTypeCode":null,"URLType":"INSPIRE WMS","URLTypID":49,"downloadURL":null,"FileName":null},{"URL":"https:\/\/obis.org\/dataset\/956d618f-91dc-4930-a253-cdf80ddb9371","externalID":"956d618f-91dc-4930-a253-cdf80ddb9371","URLTypeCode":null,"URLType":"Online dataset","URLTypID":19,"downloadURL":null,"FileName":null},{"URL":"https:\/\/rshiny.vsc.lifewatch.be\/flowcam-data\/","externalID":null,"URLTypeCode":null,"URLType":"Online dataset","URLTypID":19,"downloadURL":null,"FileName":null}],"pictures":null,"urlmaps":null,"spatreps":[{"SpatRep":"Tabular data","SpatRes":null,"Unit":null,"MapScale":null,"GeoObject":null,"CountOfFeats":null}],"fileformats":null,"resmessage":"","complete":1}
