{"datasetrec":{"DasID":5938,"Acronym":"Cyanorak","StandardTitle":"Cyanorak - A database of marine picocyanobacteria genomes","OrigTitle":null,"OrigTitleLangID":null,"OrigTitleLangCode":null,"OrigTitleLang":null,"OrigTitleLangNL":null,"VersionName":"Cyanorak Release 1.0","ContactEmail":"contact.cyanorak@sb-roscoff.fr","VersionDate":null,"VersionDay":13,"VersionMonth":3,"VersionYear":2012,"SizeReference":null,"EngAbstract":"The Cyanorak Information system is a bioinformatic tool dedicated to the expert curation and annotation of clusters of orthologous sequences from marine picocyanobacteria. This tool was designed to perform extensive genomic comparisons with the aim to better understand the ecology, physiology and evolution of these very abundant photosynthetic microorganisms.","EngDescr":"Cyanorak v.1 was initially developed in the mid 2000's to annotate the first available genomes (11 Synechococcus and 3 Prochlorococcus, Dufresne et al., 2008, Scanlan et al., 2009). The current Cyanorak v.2 has been designed to allow the import and semi-automatic annotation of new sets of picocyanobacterial genomes. Since December 2014, the database encompasses 51 Synechococcus, 3 Cyanobium and 41 Prochlorococcus genomes, including 25 Synechococcus genomes recently sequenced by the Genoscope in the framework of the METASYN project and 7 by the Center for Genomic Research (Liverpool, UK) in collaboration with the Warwick University (Coventry, UK).\r\n\r\nCyanorak v.2 was funded by the French ANR Programs, PELICAN (Microbial Genomics, ANR-09-GENM-030) and SAMOSA (Bioadapt, ANR-13-ADAP-0010), and the EU-FP7 programs microB3 (grant agreement no 287589) and MaCuMBA (grant agreement no 311975)","OrigAbstract":null,"OrigDescr":null,"Comments":null,"ReleaseDate":null,"ReleaseDate0":null,"OrigDescrLang":"English","EmbargoDate":null,"OrigDescrLangNL":"Engels","OrigLangCode":"en","OrigLangCodeExtended":"eng","OrigLangID":15,"DescrCompFlag":0,"DescrTransFlag":0,"Citation":"Cyanorak Database. Accessed: http://www.sb-roscoff.fr/cyanorak","AccessConstraints":null,"UDate":"2018-05-23","CDate":"2018-05-17","CurrencyDate":null,"RevisionDate":null,"DateLastModified":{"date":"2026-05-07 01:42:15.424615","timezone_type":1,"timezone":"+02:00"},"CheckedFlag":1,"PublicFlag":1,"VlizCoreFlag":1,"MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"StatusID":1,"DasType":"Data","DasTypeID":1,"DasOrigin":"Data collection","Progress":"Completed","AccessConstraint":"Unrestricted","AccConstrEN":"Unrestricted","AccConstrDisplay":null,"License":null,"AccConstrDescription":"The data are freely available to anybody and may be used for any purpose. \r\nUsage acknowledgement may be required","Lineage":null,"AccConID":4},"dois":null,"spcols":null,"keywords":[{"ThesaurusTerm":"Cyanobacteria","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus","Code":null,"Description":null,"OrigThesTerm":"Cyanobacteria","DutchTerm":null,"URI":null,"DasKeywordDescr":null},{"ThesaurusTerm":"Databases","ThesTypID":4,"ThesType":"CAB Thesaurus","Code":"36693","Description":null,"OrigThesTerm":"Databases","DutchTerm":null,"URI":"https://id.cabi.org/cabt/36693","DasKeywordDescr":null},{"ThesaurusTerm":"Environmental Impact Assessment","ThesTypID":10,"ThesType":"Assemble Sectors","Code":null,"Description":null,"OrigThesTerm":"Environmental Impact Assessment","DutchTerm":null,"URI":null,"DasKeywordDescr":null},{"ThesaurusTerm":"Genomes","ThesTypID":4,"ThesType":"CAB Thesaurus","Code":"51156","Description":"A genome is the full complement of genetic information (both coding and non-coding) in an organism (D. Greenbaum et al. (2001) Genome Research, 11: 1463-1468).","OrigThesTerm":"Genomes","DutchTerm":null,"URI":"https://id.cabi.org/cabt/51156","DasKeywordDescr":null},{"ThesaurusTerm":"Marine Genomics","ThesTypID":10,"ThesType":"Assemble Sectors","Code":null,"Description":null,"OrigThesTerm":"Marine Genomics","DutchTerm":null,"URI":null,"DasKeywordDescr":null},{"ThesaurusTerm":"Prochlorococcus","ThesTypID":4,"ThesType":"CAB Thesaurus","Code":"94893","Description":null,"OrigThesTerm":"Prochlorococcus","DutchTerm":null,"URI":"https://id.cabi.org/cabt/94893","DasKeywordDescr":null},{"ThesaurusTerm":"Synechococcus","ThesTypID":4,"ThesType":"CAB Thesaurus","Code":"113934","Description":null,"OrigThesTerm":"Synechococcus","DutchTerm":null,"URI":"https://id.cabi.org/cabt/113934","DasKeywordDescr":null}],"parents":null,"children":null,"othrel":null,"othrelrev":null,"ownerships":null,"taxterms":[{"DasTaxtTypID":1,"DasTaxtType":"Taxonomic coverage","TaxtID":34750,"TaxTerm":"Prochlorococcus","AphiaID":345515,"DutchTerm":null},{"DasTaxtTypID":1,"DasTaxtType":"Taxonomic coverage","TaxtID":23382,"TaxTerm":"Synechococcus Nägeli, 1849","AphiaID":160572,"DutchTerm":null}],"frameworks":null,"otherterms":null,"temporal":null,"geographical":null,"meastypes":[{"MethID":null,"DasMeasTypID":11754,"DasMeasType":"Genome","Matrix":"Biota","MatrixNL":"Biota","Parameter":"DNA","ParameterNL":null,"Description":null,"Unit":null,"Methodology":null,"Protocol":null,"QualityControl":null,"Precision":null,"Detectionlimit":null,"Instrument":null,"InstrumentUrl":null,"MethFull":"","ParaCategoryTitle":null,"ParaCatCode":null}],"dasthemes":[{"DasThemeID":73,"DasTheme":"Biology > Plankton > Phytoplankton","DasTheme0":"Phytoplankton","DutchTerm":"Fytoplankton"}],"projects":null,"refs":null,"urls":[{"URL":"http://abims.sb-roscoff.fr/cyanorak","externalID":null,"URLTypeCode":null,"URLType":"Dataset dedicated website","URLTypID":36,"downloadURL":null,"FileName":null}],"pictures":null,"urlmaps":null,"spatreps":null,"fileformats":null,"resmessage":"","complete":1}