{"instituterec":{"StatusID":1,"InsID":8187,"StandardName":"Service d'Écologie Numérique des Milieux Aquatiques","OrigName":"Numerical Ecology and Aquatic Systems group","OrigNameLangCode":"en","OrigNameLangID":15,"Acronym":"Umons","HigherInsID":12894,"VlizCoreFlag":1,"AdrID":142375,"Line1":"Avenue du champ de Mars 6","Line2":"Bâtiment Pentagone","Line3":"7000 Mons","Line4":null,"Phone":"+32-(0)6-537 34 97","GSM":null,"Email":" philippe.grosjean@umons.ac.be","Lat":"50.4626827","Lon":"3.9529666","OrigNameLang":"English","OrigNameLangNL":"Engels","AbstractEnglish":"The Numerical Ecology unit studies marine plankton using digital imaging techniques combined with automated and semi-automated machine learning classification. The research focus is on the adaptation potential of these animals to environmental changes (temperature, acidification and eutrophication). Furthermore, the research group also develops scientific software, which is called Zoo/PhytoImage, for the elaboration of spatio-temporal plankton series by automating the sample processing. This open-source software allows to analyse various kinds of digital images of plankton, and to measure, count and classify the different planktonic organisms digitally fixed on these images. It then calculates ecologically important variables, such as abundances, biomasses and size spectra by taxonomic group or for the whole sample. Also other extensions to R software are developed, such as SciViews for a homogenisation of its user interface, pastecs for the analysis of spatio-temporal series in ecology, aurelhy for the spatial interpolation of hydro-climatic variables, or the generation of graphs to be directly used for publication.","AbstractOtherLang":"De onderzoeksgroep Écologie Numérique bestudeert mariene plankton met behulp van digitale beeldvormingstechnieken in combinatie met geautomatiseerde en semi-geautomatiseerde machine-learning classificatie. Het onderzoek richt zich op het aanpassingsvermogen van deze dieren aan veranderingen in het milieu (temperatuur, verzuring en eutrofiëring). Daarnaast ontwikkelt de onderzoeksgroep ook wetenschappelijke software, genaamd Zoo/PhytoImage, voor de uitwerking van ruimtelijk-temporele plankton reeksen door de staalverwerking te automatiseren. Deze open-source software maakt het mogelijk verschillende soorten digitale beelden van plankton te analyseren, en de verschillende planktonische organismen digitaal op deze beelden te meten, te tellen en te classificeren. Vervolgens berekent het ecologisch belangrijke variabelen, zoals abundanties, biomassa's en groottespectra per taxonomische groep of voor het gehele staal. Ook andere uitbreidingen op R-software worden ontwikkeld, zoals SciViews voor een homogenisering van de gebruikersinterface, pastecs voor de analyse van spatio-temporele reeksen in de ecologie, aurelhy voor de ruimtelijke interpolatie van hydro-klimaatvariabelen, of het genereren van grafieken die rechtstreeks voor publicatie kunnen worden gebruikt.","AbstractLangCode":"nl","AbstractLangID":41,"AbstractLang":"Dutch","AbstractLangNL":"Nederlands","SuccessorOfInsID":null,"DateLastModified":{"date":"2024-06-04 01:34:19.073000","timezone_type":1,"timezone":"+00:00"},"PrevIns":null,"PrevAcro":null,"PublicFlag":1,"CheckedFlag":0,"ParID":4528,"InstituteType":"Scientific","EnvName":"Belgium","ISO3166":"BE","LevelName":null,"ND":"2007-06-21","UD":"2013-10-24","EncAddress":", Avenue du champ de Mars 6, Bâtiment Pentagone, 7000 Mons, Belgium"},"parent":{"PublicFlag":1,"InsID":12894,"OrigNameLangCode":"en","OrigNameLangID":15,"FullStandardName":"Université de Mons; Faculté des Sciences; Département de Biologie","FullOrigName":"Université de Mons; Faculté des Sciences; Department of Biology","Acronym":"Umons"},"institutes":null,"references":[{"BRefID":337784,"RR":"<b>Fullgrabe, L.; Grosjean, P.; Gobert, S.; Lejeune, P.; Leduc, M.; Engels, G.; Dauby, P.; Boissery, P.; Richir, J.</b> (2020). Zooplankton dynamics in a changing environment: a 13-year survey in the northwestern Mediterranean Sea. <i>Mar. Environ. Res. 159</i>: 104962. <a href=\"https://hdl.handle.net/10.1016/j.marenvres.2020.104962\" target=\"_blank\">https://hdl.handle.net/10.1016/j.marenvres.2020.104962</a>","PeerRev":1},{"BRefID":323073,"RR":"<b>Rouabhi, Y.L.; Grosjean, P.; Boutiba, Z.; Rouane Hacene, O.; Richir, J.</b> (2019). Reproductive cycle and follicle cleaning process of <i>Mytilus galloprovincialis</i> (Mollusca: Bivalvia) from a polluted coastal site in Algeria. <i>Invertebr. Reprod. Dev. 63(4)</i>: 255-267. <a href=\"https://dx.doi.org/10.1080/07924259.2019.1631221\" target=\"_blank\">https://dx.doi.org/10.1080/07924259.2019.1631221</a>","PeerRev":1},{"BRefID":285309,"RR":"<b>Todinanahary, G.G.B.; Lavitra, T.; Andrifanilo, H.H.; Puccini, N.; Grosjean, P.; Eeckhaut, I.</b> (2017). Community-based coral aquaculture in Madagascar: a profitable economic system for a simple rearing technique? <i>Aquaculture 467</i>: 225-234. <a href=\"https://dx.doi.org/10.1016/j.aquaculture.2016.07.012\" target=\"_blank\">https://dx.doi.org/10.1016/j.aquaculture.2016.07.012</a>","PeerRev":1},{"BRefID":256704,"RR":"<b>Collard, M.; Rastrick, P.; Calosi, P.; Demolder, Y.; Dille, J.; Findlay, H.; Hall-Spencer, J.; Milazzo, M.; Moulin, L.; Widdicombe, S.; Dehairs, F.; Dubois, P.</b> (2016). The impact of ocean acidification and warming on the skeletal mechanical properties of the sea urchin <i>Paracentrotus lividus</i> from laboratory and field observations. <i>ICES J. Mar. Sci./J. Cons. int. Explor. Mer 73(3)</i>: 727-738. <a href=\"https://dx.doi.org/10.1093/icesjms/fsv018\" target=\"_blank\">https://dx.doi.org/10.1093/icesjms/fsv018</a>","PeerRev":1},{"BRefID":285675,"RR":"<b>Gobert, S.; Lepoint, G.; Pelaprat, C.; Remy, F.; Lejeune, P.; Richir, J.; Abadie, A.</b> (2016). Temporal evolution of sand corridors in a <i>Posidonia oceanica</i> seascape: a 15-year study. <i>Mediterr. Mar. Sci. 17(3)</i>: 777-784. <a href=\"https://dx.doi.org/10.12681/mms.1816\" target=\"_blank\">https://dx.doi.org/10.12681/mms.1816</a>","PeerRev":1},{"BRefID":246770,"RR":"<b>Moulin, L.; Grosjean, P.; Leblud, J.; Batigny, A.; Collard, M.; Dubois, P.</b> (2015). Long-term mesocosms study of the effects of ocean acidification on growth and physiology of the sea urchin <i>Echinometra mathaei</i>. <i>Mar. Environ. Res. 103</i>: 103-114. <a href=\"http://dx.doi.org/10.1016/j.marenvres.2014.11.009\" target=\"_blank\">dx.doi.org/10.1016/j.marenvres.2014.11.009</a>","PeerRev":1},{"BRefID":246964,"RR":"<b>Moulin, L.; Grosjean, P.; Leblud, J.; Batigny, A.; Dubois, P.</b> (2014). Impact of elevated <i>p</i>CO2 on acid-base regulation of the sea urchin <i>Echinometra mathaei</i> and its relation to resistance to ocean acidification: a study in mesocosms. <i>J. Exp. Mar. Biol. Ecol. 457</i>: 97-104. <a href=\"http://dx.doi.org/10.1016/j.jembe.2014.04.007\" target=\"_blank\">dx.doi.org/10.1016/j.jembe.2014.04.007</a>","PeerRev":1},{"BRefID":246837,"RR":"<b>Sheridan, C.; Grosjean, P.; Leblud, J.; Palmer, V; Kushmaro, A; Eeckhaut, I.</b> (2014). Sedimentation rapidly induces an immune response and depletes energy stores in a hard coral. <i>Coral Reefs 33(4)</i>: 1067-1076. <a href=\"http://dx.doi.org/10.1007/s00338-014-1202-x\" target=\"_blank\">dx.doi.org/10.1007/s00338-014-1202-x</a>","PeerRev":1},{"BRefID":238205,"RR":"<b>Collard, M.; Laitat, K.; Moulin, L.; Catarino, A.I.; Grosjean, P.; Dubois, P.</b> (2013). Buffer capacity of the coelomic fluid in echinoderms. <i>Comp. Biochem. Physiol., Part A Mol. Integr. Physiol. 166(1)</i>: 199-206. <a href=\"http://dx.doi.org/10.1016/j.cbpa.2013.06.002\" target=\"_blank\">dx.doi.org/10.1016/j.cbpa.2013.06.002</a>","PeerRev":1},{"BRefID":212433,"RR":"<b>Gillan, D.C.; Baeyens, W.; Bechara, R.; Billon, G.; Denis, K.; Grosjean, P.; Leermakers, M.; Lesven, L.; Pede, A.; Sabbe, K.; Gao, Y.</b> (2012). Links between bacterial communities in marine sediments and trace metal geochemistry as measured by in situ DET/DGT approaches. <i>Mar. Pollut. Bull. 64(2)</i>: 353-362. <a href=\"http://dx.doi.org/10.1016/j.marpolbul.2011.11.001\" target=\"_blank\">dx.doi.org/10.1016/j.marpolbul.2011.11.001</a>","PeerRev":1},{"BRefID":296002,"RR":"<b>Lancelot, C.; Grosjean, P.; Rousseau, V.; Breton, E.; Glibert, P.M.</b> (2012). Rejoinder to \"Perils of correlating CUSUM-transformed variables to infer ecological relationships (Breton et al. 2006; Glibert 2010)\". <i>Limnol. Oceanogr. 57(2)</i>: 669-670. <a href=\"https://dx.doi.org/10.4319/lo.2012.57.2.0669\" target=\"_blank\">https://dx.doi.org/10.4319/lo.2012.57.2.0669</a>","PeerRev":1},{"BRefID":211043,"RR":"<b>Bailly, P.; Grosjean, P.; Flammang, P.</b> (2009). Measurement of the attachment strength of brachiolaria larvae and metamorphic individuals of the sea star <i>Asterina gibbosa</i> by a centrifugation method. <i>J. Exp. Mar. Biol. Ecol. 372(1-2)</i>: 82-90. <a href=\"http://dx.doi.org/10.1016/j.jembe.2009.02.011\" target=\"_blank\">dx.doi.org/10.1016/j.jembe.2009.02.011</a>","PeerRev":1},{"BRefID":211163,"RR":"<b>Irigoien, X.; Fernandes, J.A.; Grosjean, P.; Denis, K.; Albaina, A.; Santos, M.</b> (2009). Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment. <i>J. Plankton Res. 31(1)</i>: 1-17. <a href=\"http://dx.doi.org/10.1093/plankt/fbn096\" target=\"_blank\">dx.doi.org/10.1093/plankt/fbn096</a>","PeerRev":1},{"BRefID":211427,"RR":"<b>Benfield, M.C.; Grosjean, P.; Culverhouse, P.F.; Irigoien, X.; Sieracki, M.E.; Lopez-Urrutia, A.; Dam, H.G.; Hu, Q.; Davis, C.S.; Hansen, A.; Pilskaln, C.H.; Riseman, E.M.; Schultz, H.; Utgoff, P.E.; Gorsky, G.</b> (2007). RAPID Research on Automated Plankton Identification. <i>Oceanography 20(2)</i>: 172-187","PeerRev":1},{"BRefID":122962,"RR":"<b>Kell, L.T.; Mosqueira, I.; Grosjean, P.; Fromentin, J.-M.; Garcia, D.; Hillary, R.; Jardim, E.; Mardle, S.; Pastoors, M.A.; Poos, J.-J.; Scott, F.; Scott, R.D.</b> (2007). FLR: an open-source framework for the evaluation and development of management strategies. <i>ICES J. Mar. Sci./J. Cons. int. Explor. Mer 64(4)</i>: 640-646. <a href=\"http://dx.doi.org/10.1093/icesjms/fsm012\" target=\"_blank\">dx.doi.org/10.1093/icesjms/fsm012</a>","PeerRev":1},{"BRefID":210687,"RR":"<b>Haesaerts, D.; Finlay, J.A.; Callow, M.E.; Callow, J.A.; Grosjean, P.; Jangoux, M.; Flammang, P.</b> (2005). Evaluation of the attachment strength of individuals of <i>Asterina gibbosa</i> (Asteroidea, Echinodermata) during the perimetamorphic period. <i>Biofouling (Print) 21(5-6)</i>: 229-235. <a href=\"https://dx.doi.org/10.1080/08927010500414901\" target=\"_blank\">https://dx.doi.org/10.1080/08927010500414901</a>","PeerRev":1},{"BRefID":322050,"RR":"<b>Martin, J.L.; Gypens, N.</b> (2020). Fantastic beasts and when to find them. Characterization of the dominant mixoplankton in the Belgian Coastal Zone (BCZ) based on molecular biology data, <b><i>in</i></b>: Mees, J. <i>et al.</i> <i>Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 18 March 2020. VLIZ Special Publication,</i> 84: pp. 61-62","PeerRev":0},{"BRefID":355005,"RR":"<b>Moulin, L.; Dubois, P.; Grosjean, P.</b> (2011). Impact of ocean acidification on growth and physiology of <i>Echinometra mathei</i>: a mesocosm study, <b><i>in</i></b>: <i>World Conference on Marine Biodiversity 2011. Our Oceans, Our Future: Digital Object Abstract Booklet.</i> pp. 7","PeerRev":0},{"BRefID":211949,"RR":"<b>Lancelot, C. ; Rousseau, V.; Lacroix, G.; Denis, K.; Gypens, N.; Grosjean, P.; Van Nieuwenhove, K.; Parent, J.-Y.; Ruddick, K.; Delbare, D.</b> (2009). Combined effect of changing hydroclimate and human activity on coastal ecosystem health. AMORE III (Advanced MOdeling and Research on eutrophication) project. Final Report phase 1. Belgian Science Policy: Brussels.  36 pp.","PeerRev":null}],"conferences":null,"datasets":null,"persons":[{"PersID":3942,"Surname":"Grosjean","Firstname":"Philippe","Initials":"P.","DirectorFlag":1,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":36624,"Surname":"Engels","Firstname":"Guyliann","Initials":"G.","DirectorFlag":null,"MarineSciFlag":null,"SpecializedFlag":null,"Function":null}],"pastpers":[{"PersID":27291,"Surname":"Albaina","Firstname":"Aitor","Initials":"A.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":31920,"Surname":"Ali","Firstname":"Nour","Initials":"N.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":31337,"Surname":"Batigny","Firstname":"Antoine\r\nAntoine\r\nAntoine\r\n\r\nAntoine","Initials":"A.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":12454,"Surname":"Denis","Firstname":"Kevin","Initials":"K.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":31336,"Surname":"Leblud","Firstname":"Julien","Initials":"J.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":30158,"Surname":"Moulin","Firstname":"Laure","Initials":"L.","DirectorFlag":null,"MarineSciFlag":1,"SpecializedFlag":null,"Function":null},{"PersID":38650,"Surname":"Rouabhi","Firstname":"Yamina","Initials":"Y.L.","DirectorFlag":null,"MarineSciFlag":null,"SpecializedFlag":null,"Function":null},{"PersID":31919,"Surname":"Tabout","Firstname":"Narjisse","Initials":"N.","DirectorFlag":null,"MarineSciFlag":null,"SpecializedFlag":1,"Function":null},{"PersID":31918,"Surname":"Wacquet","Firstname":"Guillaume","Initials":"G.","DirectorFlag":null,"MarineSciFlag":null,"SpecializedFlag":1,"Function":null}],"subpers":null,"projects":[{"ProID":2084,"Acronym":"AMORE III","Progress":"Completed","StandardTitle":"Combined Effect of Changing Hydroclimate and Human Activity on Coastal Ecosystem Health"}],"urls":[{"URL":"https://sharepoint1.umons.ac.be/fr/universite/facultes/fs/services/institut_bio/ecologie_numerique_milieux_aquatiques/pages/default.aspx","externalID":null,"URLTypeCode":null,"URLType":"Institute home page"},{"URL":"portail.umons.ac.be/FR/universite/facultes/fs/services/institut_bio/ecologie_numerique_milieux_aquatiques/Pages/Equipe.aspx","externalID":null,"URLTypeCode":null,"URLType":null}],"pictures":[],"published":null,"affrefs":null,"collections":null,"thesterms":[{"ThesaurusTerm":"Biodiversity","ThestID":181484,"ThesTypID":29,"ThesType":"MOG Topics"},{"ThesaurusTerm":"Climate change","ThestID":181490,"ThesTypID":29,"ThesType":"MOG Topics"},{"ThesaurusTerm":"Microbiology","ThestID":181509,"ThesTypID":29,"ThesType":"MOG Topics"}],"taxterms":null,"geoterms":null,"thestermsFRIS":[{"ThesaurusTerm":"Biodiversity","DutchTerm":"Biodiversiteit","ThestID":181484,"ThesTypID":29,"ThesType":"MOG Topics","Code":null},{"ThesaurusTerm":"Climate change","DutchTerm":"Klimaatverandering","ThestID":181490,"ThesTypID":29,"ThesType":"MOG Topics","Code":null},{"ThesaurusTerm":"Microbiology","DutchTerm":"Microbiologie","ThestID":181509,"ThesTypID":29,"ThesType":"MOG Topics","Code":null}],"nXtins":null,"previns":null,"spcols":[{"SpColID":99,"SpName":"Marine expertise"},{"SpColID":122,"SpName":"Marine expertise: Type: French speaking university"}],"resmessage":"","complete":1,"participantrec":null,"peerrevs":16,"urlmaps":[]}