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Cytometric fingerprints of gut microbiota predict Crohn’s disease state. <i>ISME J. 15(1)</i>: 354-358. <a href=\"https://dx.doi.org/10.1038/s41396-020-00762-4\" target=\"_blank\">https://dx.doi.org/10.1038/s41396-020-00762-4</a>","AutID":250991,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":348873,"RR":"<b>Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W.</b> (2021). PhenoGMM: Gaussian mixture modeling of cytometry data quantifies changes inmicrobial community structure. <i>mSphere 6(1)</i>: e00530-20. <a href=\"https://dx.doi.org/10.1128/msphere.00530-20\" target=\"_blank\">https://dx.doi.org/10.1128/msphere.00530-20</a>","AutID":377571,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":321078,"RR":"<b>García-Timermans, C.; Rubbens, P.; Heyse, J.; Kerckhof, F.-M.; Props, R.; Skirtach, A.G.; Waegeman, W.; Boon, N.</b> (2020). Discriminating bacterial phenotypes at the population and single‐cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting. <i>Cytometry A 97(7)</i>: 713-726. <a href=\"https://dx.doi.org/10.1002/cyto.a.23952\" target=\"_blank\">https://dx.doi.org/10.1002/cyto.a.23952</a>","AutID":400840,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":322911,"RR":"<b>Le, D.; Nguyen, P.; Nguyen, D.; Dierckens, K.; Boon, N.; Lacoere, T.; Kerckhof, F.-M.; De Vrieze, J.; Vadstein, O.; Bossier, P.</b> (2020). Gut microbiota of migrating wild rabbit fish (<i>Siganus guttatus</i>) larvae have low spatial and temporal variability. <i>Microb. Ecol. 79</i>: 539-551. <a href=\"https://dx.doi.org/10.1007/s00248-019-01436-1\" target=\"_blank\">https://dx.doi.org/10.1007/s00248-019-01436-1</a>","AutID":407988,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":321910,"RR":"<b>Czechowska, Kamila; Lannigan, Joanne; Wang, Lili; Arcidiacono, Judith; Ashhurst, Thomas M.; Barnard, Ruth M.; Bauer, Steven; Bispo, Cláudia; Bonilla, Diana L.; Brinkman, Ryan R.; Cabanski, Maciej; Chang, Hyun‐Dong; Chakrabarti, Lina; Chojnowski, Grace; Cotleur, Bunny; Degheidy, Heba; Dela Cruz, Gelo V.; Eck, Steven; Elliott, John; Errington, Rachel; Filby, Andy; Gagnon, Dominic; Gardner, Rui; Green, Cherie; Gregory, Michael; Groves, Christopher J.; Hall, Christopher; Hammes, Frederik; Hedrick, Michael; Hoffman, Robert; Icha, Jaroslav; Ivaska, Johanna; Jenner, Dominic C.; Jones, Derek; Kerckhof, Frederiek‐Maarten; Kukat, Christian; Lanham, David; Leavesley, Silas; Lee, Michael; Lin‐Gibson, Sheng; Litwin, Virginia; Liu, Yanli; Molloy, Jenny; Moore, Jonni S.; Müller, Susann; Nedbal, Jakub; Niesner, Raluca; Nitta, Nao; Ohlsson‐Wilhelm, Betsy; Paul, Nicole E.; Perfetto, Stephen; Portat, Ziv; Props, Ruben; Radtke, Stefan; Rayanki, Radhika; Rieger, Aja; Rogers, Samson; Rubbens, Peter; Salomon, Robert; Schiemann, Matthias; Sharpe, John; Sonder, Soren Ulrik; Stewart, Jennifer J.; Sun, Yongliang; Ulrich, Henning; Van Isterdael, Gert; Vitaliti, Alessandra; Vreden, Caryn; Weber, Michael; Zimmermann, Jakob; Vacca, Giacomo; Wallace, Paul; Tárnok, Attila</b> (2019). Cyt‐Geist: current and future challenges in cytometry: reports of the CYTO 2018 conference workshops. <i>Cytometry A 95(6)</i>: 598-644. <a href=\"https://dx.doi.org/10.1002/cyto.a.23777\" target=\"_blank\">https://dx.doi.org/10.1002/cyto.a.23777</a>","AutID":403581,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":336135,"RR":"<b>Ehsani, E.; Dumolin, C.; Arends, J.B.A.; Kerckhof, F.-M.; Hu, X.; Vandamme, P.; Boon, N.</b> (2019). Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria. <i>Appl. Microbiol. Biotechnol. 103(19)</i>: 8241-8253. <a href=\"https://dx.doi.org/10.1007/s00253-019-10082-z\" target=\"_blank\">https://dx.doi.org/10.1007/s00253-019-10082-z</a>","AutID":441555,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":321915,"RR":"<b>Nguyen, B.; Rubbens, P.; Kerckhof, F.-M.; Boon, N.; De Baets, B.; Waegeman, W.</b> (2019). Learning single‐cell distances from cytometry data. <i>Cytometry A 95(7)</i>: 782-791. <a href=\"https://dx.doi.org/10.1002/cyto.a.23792\" target=\"_blank\">https://dx.doi.org/10.1002/cyto.a.23792</a>","AutID":403614,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":311373,"RR":"<b>Scoma, A.; Heyer, R.; Rifai, R.; Dandyk, C.; Marshall, I.; Kerckhof, F.-M.; Marietou, A.; Boshker, H.T.S.; Meysman, F.J.R.; Malmos, K.G.; Vosegaard, T.; Vermeir, P.; Banat, I.M.; Benndorf, D.; Boon, N.</b> (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. <i>ISME J. 13(4)</i>: 1004-1018. <a href=\"https://dx.doi.org/10.1038/s41396-018-0324-5\" target=\"_blank\">https://dx.doi.org/10.1038/s41396-018-0324-5</a>","AutID":377571,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":321914,"RR":"<b>García-Timermans, C.; Rubbens, P.; Kerckhof, F.-M.; Buysschaert, B.; Khalenkow, D.; Waegeman, W.; Skirtach, A.G.; Boon, N.</b> (2018). Label-free Raman characterization of bacteria calls for standardized procedures. <i>J. microbiol. methods 151</i>: 69-75. <a href=\"https://dx.doi.org/10.1016/j.mimet.2018.05.027\" target=\"_blank\">https://dx.doi.org/10.1016/j.mimet.2018.05.027</a>","AutID":403606,"MonDate":null,"AnaDate":2018,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":293578,"RR":"<b>Kuuliala, L.; Al Hage, Y.; Ioannidis, A.-G.; Sader, M.; Kerckhof, F.-M.; Vanderroost, M.; Boon, N.; De Baets, B.; De Meulenaer, B.; Ragaert, P.; Devlieghere, F.</b> (2018). Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (<i>Gadus morhua</i>) stored under modified atmospheres. <i>Food Microbiol. 70</i>: 232-244. <a href=\"https://dx.doi.org/10.1016/j.fm.2017.10.011\" target=\"_blank\">https://dx.doi.org/10.1016/j.fm.2017.10.011</a>","AutID":250991,"MonDate":null,"AnaDate":2018,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":288222,"RR":"<b>Props, R.; Kerckhof, F.-M.; Rubbens, P.; De Vrieze, J.; Hernandez Sanabria, E.; Waegeman, W.; Monsieurs, P.; Hammes, F.; Boon, N.</b> (2017). Absolute quantification of microbial taxon abundances. <i>ISME J. 11(2)</i>: 584-587. <a href=\"https://dx.doi.org/10.1038/ismej.2016.117\" target=\"_blank\">https://dx.doi.org/10.1038/ismej.2016.117</a>","AutID":266532,"MonDate":null,"AnaDate":2017,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":285305,"RR":"<b>Scoma, A.; Coma, M.; Kerckhof, F.-M.; Boon, N.; Rabaey, K.</b> (2017). Efficient molasses fermentation under high salinity by inocula of marine and terrestrial origin. <i>Biotechnology for Biofuels 10</i>: 17 pp. <a href=\"https://dx.doi.org/10.1186/s13068-017-0701-8\" target=\"_blank\">https://dx.doi.org/10.1186/s13068-017-0701-8</a>","AutID":258341,"MonDate":null,"AnaDate":2017,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":308046,"RR":"<b>Ho, A.; Angel, R.; Veraart, A.J.; Daebeler, A.; Jia, Z.; Kim, S.Y.; Kerckhof, F.-M.; Boon, N.; Bodelier, P.L.E.</b> (2016). Biotic interactions in microbial communities as modulators of biogeochemical processes: methanotrophy as a model system. <i>Front. Microbiol. 7</i>: 11. <a href=\"https://dx.doi.org/10.3389/fmicb.2016.01285\" target=\"_blank\">https://dx.doi.org/10.3389/fmicb.2016.01285</a>","AutID":369384,"MonDate":null,"AnaDate":2016,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":283741,"RR":"<b>Vekeman, B.; Kerckhof, F.-M.; Cremers, G.; de Vos, P.; Vandamme, P.; Boon, N.; Op den Camp, H.J.M.; Heylen, K.</b> (2016). New <i>Methyloceanibacter</i> diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase. <i>Environ. Microbiol. 18(12)</i>: 4523-4536. <a href=\"http://dx.doi.org/10.1111/1462-2920.13485\" target=\"_blank\">http://dx.doi.org/10.1111/1462-2920.13485</a>","AutID":250991,"MonDate":null,"AnaDate":2016,"PeerRev":1,"outputType":"1_A1","OpenAcc":1}],"Abstr":[{"BRefID":321919,"RR":"<b>García-Timermans, C.; Rubbens, P.; Kerckhof, F.M.; Waegeman, W.; Boon, N.</b> (2019). 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