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Morphological and genetic characterization of <i>Stylophora madagascarensis</i>, <i>Pocillopora acuta</i>, and <i>Pocillopora verrucosa</i> in Mauritius and their thermal photophysiological stress responses. <i>Bull. Mar. Sci. 101(1)</i>: 247-269. <a href=\"https://dx.doi.org/10.5343/bms.2023.0124\" target=\"_blank\">https://dx.doi.org/10.5343/bms.2023.0124</a>","AutID":434554,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":407892,"RR":"<b>Stankiewicz, K.H.; Guiglielmoni, N.; Kitchen, S.A.; Flot, J.-F.; Barott, K.L.; Davies, S.W.; Finnerty, J.R.; Grace, S.P.; Kaufman, L.S.; Putnam, H.M.; Rotjan, R.D.; Sharp, K.H.; Peters, E.C.; Baums, I.B.</b> (2025). Genomic comparison of the temperate coral <i>Astrangia poculata</i> with tropical corals yields insights into winter quiescence, innate immunity, and sexual reproduction. <i>G3-Genes Genomes Genetics 15(4)</i>: jkaf03. <a href=\"https://dx.doi.org/10.1093/g3journal/jkaf033\" target=\"_blank\">https://dx.doi.org/10.1093/g3journal/jkaf033</a>","AutID":588175,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":411072,"RR":"<b>Vargas-Chávez, C.; Benítez-Álvarez, L.; Martínez-Redondo, G.I.; Álvarez-González, L.; Salces-Ortiz, J.; Eleftheriadi, K.; Escudero, N.; Guiglielmoni, N.; Flot, J.-F.; Novo, M.; Ruiz-Herrera, A.; McLysaght, A.; Fernández, R.</b> (2025). An episodic burst of massive genomic rearrangements and the origin of non-marine annelids. <i>Nature Ecology & Evolution 9(7)</i>: 1263-1279. <a href=\"https://dx.doi.org/10.1038/s41559-025-02728-1\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-025-02728-1</a>","AutID":594810,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":393358,"RR":"<b>Ginevra, L.; Sirot, C.; Campbell, H.; Hermand, F.; Brophy, D.; Flot, J.-F.; Graham, C.T.</b> (2024). Do fish gut microbiotas vary across spatial scales? A case study of <i>Diplodus vulgaris</i> in the Mediterranean Sea. <i>Anim. Microbiome 6(1)</i>. <a href=\"https://dx.doi.org/10.1186/s42523-024-00319-2\" target=\"_blank\">https://dx.doi.org/10.1186/s42523-024-00319-2</a>","AutID":516110,"MonDate":null,"AnaDate":2024,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":361353,"RR":"<b>Bizic, M.; Brad, T.; Ionescu, D.; Barbu-Tudoran, L.; Zoccarato, L.; Aerts, J.W.; Contarini, P.-E.; Gros, O.; Volland, J.-M.; Popa, R.; Ody, J.; Vellone, D.; Flot, J.-F.; Tighe, S.; Sarbu, S.M.</b> (2023). Cave <i>Thiovulum</i> (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species. <i>ISME J. 17</i>: 340-353. <a href=\"https://dx.doi.org/10.1038/s41396-022-01350-4\" target=\"_blank\">https://dx.doi.org/10.1038/s41396-022-01350-4</a>","AutID":516110,"MonDate":null,"AnaDate":2023,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":361541,"RR":"<b>Boutet, I.; Alves Monteiro, H.J.; Baudry, L.; Takeuchi, T.; Bonnivard, E.; Billoud, B.; Farhat, S.; Gonzales-Araya, R.; Salaun, B.; Andersen, A.C.; Toullec, J.-Y.; Lallier, F.H.; Flot, J.-F.; Guiglielmoni, N.; Guo, X.; Li, C.; Allam, B.; Pales-Espinosa, E.; Hemmer-Hansen, J.; Moreau, P.; Marbouty, M.; Koszul, R.; Tanguy, A.</b> (2022). Chromosomal assembly of the flat oyster (<i>Ostrea edulis</i> L.) genome as a new genetic resource for aquaculture. <i>Evol. Appl. 15(11)</i>: 1730-1748. <a href=\"https://dx.doi.org/10.1111/eva.13462\" target=\"_blank\">https://dx.doi.org/10.1111/eva.13462</a>","AutID":411265,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":352572,"RR":"<b>Farhat, S.; Bonnivard, E.; Espinosa, E.P.; Tanguy, A.; Boutet, I.; Guiglielmoni, N.; Flot, J.-F.; Allam, B.</b> (2022). Comparative analysis of the <i>Mercenaria mercenaria</i> genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks. <i>BMC Genom. 23(1)</i>: 192. <a href=\"https://dx.doi.org/10.1186/s12864-021-08262-1\" target=\"_blank\">https://dx.doi.org/10.1186/s12864-021-08262-1</a>","AutID":488687,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":361586,"RR":"<b>Ramirez-Portilla, C.; Bieger, I.M.; Belleman, R.G.; Wilke, T.; Flot, J.-F.; Baird, A.H.; Harii, S.; Sinniger, F.; Kaandorp, J.A.</b> (2022). Quantitative three-dimensional morphological analysis supports species discrimination in complex-shaped and taxonomically challenging corals. <i>Front. Mar. Sci. 9</i>: 955582. <a href=\"https://dx.doi.org/10.3389/fmars.2022.955582\" target=\"_blank\">https://dx.doi.org/10.3389/fmars.2022.955582</a>","AutID":517551,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":352753,"RR":"<b>Ramírez-Portilla, C.; Baird, A.H.; Cowman, P.F.; Quattrini, A.M.; Harii, S.; Sinniger, F.; Flot, J.-F.</b> (2022). Solving the coral species delimitation conundrum. <i>Syst. Biol. 71(2)</i>: 461-475. <a href=\"https://dx.doi.org/10.1093/sysbio/syab077\" target=\"_blank\">https://dx.doi.org/10.1093/sysbio/syab077</a>","AutID":489736,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":361731,"RR":"<b>Rodriguez Jimenez, A.; Guiglielmoni, N.; Goetghebuer, L.; Dechamps, E.; George, I.F.; Flot, J.-F.</b> (2022). Comparative genome analysis of <i>Vagococcus fluvialis</i> reveals abundance of mobile genetic elements in sponge-isolated strains. <i>BMC Genom. 23(1)</i>: 618. <a href=\"https://dx.doi.org/10.1186/s12864-022-08842-9\" target=\"_blank\">https://dx.doi.org/10.1186/s12864-022-08842-9</a>","AutID":516110,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":333929,"RR":"<b>Baird, A.H.; Guest, J.R.; Edwards, A.J.; Bauman, A.G.; Bouwmeester, J.; Mera, H.; Abrego, D.; Álvarez-Noriega, M.; Babcock, R.C.; Barbosa , M.B.; Bonito, V.; Burt, J.; Cabaitan, P.C.; Chang, C.-F.; Chavanich, S.; Chen, C.A.; Chen, C.-J.; Chen, W.-J.; Chung, F.-C.; Connolly, S.R.; Cumbo, V.R.; Dornelas, M.; Doropoulos, C.; Eyal, G.; Eyal-Shaham, L.; Fadli, N.; Figueiredo, J.; Flot, J.-F.; Gan, S.-H.; Gomez, E.; Graham, E.M.; Grinblat, M.; Gutiérrez-Isaza, N.; Harii, S.; Harrison, P.L.; Hatta, M.; Ho, N.A.J.; Hoarau, G.; Hoogenboom, M.; Howells, E.J.; Iguchi, A.; Isomura, N.; Jamodiong, E.A.; Jandang, S.; Keyse, J.; Kitanobo, S.; Kongjandtre, N.; Kuo, C.-Y.; Ligson, C.; Lin, C.-H.; Low, J.; Loya, Y.; Maboloc, E.A.; Madin, J.S.; Mezaki, T.; Min, C.; Morita, M.; Moya, A.; Neo, S.-H.; Nitschke, M.R.; Nojima, S.; Nozawa, Y.; Piromvaragorn, S.; Plathong, S.; Puill-Stephan, E.; Quigley, K.; Ramirez-Portilla, C.; Ricardo, G.; Sakai, K.; Sampayo, E.; Shlesinger, T.; Sikim, L.; Simpson, C.; Sims, C.A.; Sinniger, F.; Spiji, D.A.; Tabalanza, T.; Tan, C.-H.; Terraneo, T.I.; Torda, G.; True, J.; Tun, K.; Vicentuan, K.; Viyakarn, V.; Waheed, Z.; Ward, S.; Willis, B.; Woods, R.M.; Woolsey, E.S.; Yamamoto, H.H.; Yusuf, S.</b> (2021). An Indo-Pacific coral spawning database. <i>Scientific Data 8(1)</i>: 35. <a href=\"https://dx.doi.org/10.1038/s41597-020-00793-8\" target=\"_blank\">https://dx.doi.org/10.1038/s41597-020-00793-8</a>","AutID":411265,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":337439,"RR":"<b>Montanari, A.; Cerveau, N.; Fiasca, B.; Flot, J.-F.; Galassi, D.; Mainiero, M.; McGee, D.; Namiotko, T.; Recanatini, S.; Stoch, F.</b> (2021). Stygobitic crustaceans in an anchialine cave with an archeological heritage at Vodeni Rat (Island of Sveti Klement, Hvar, Croatia). <i>International Journal of Speleology 50(1)</i>: 1-14. <a href=\"https://hdl.handle.net/10.5038/1827-806X.50.1.2342\" target=\"_blank\">https://hdl.handle.net/10.5038/1827-806X.50.1.2342</a>","AutID":434554,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":337410,"RR":"<b>Terrana, L.; Flot, J.-F.; Eeckhaut, I.</b> (2021). ITS1 variation among <i>Stichopathes</i> cf. <i>maldivensis</i> (Hexacorallia: Antipatharia) whip black corals unveils conspecificity and population connectivity at local and global scales across the Indo-Pacific. <i>Coral Reefs 40(2)</i>: 521-533. <a href=\"https://hdl.handle.net/10.1007/s00338-020-02049-8\" target=\"_blank\">https://hdl.handle.net/10.1007/s00338-020-02049-8</a>","AutID":411265,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":337599,"RR":"<b>van der Ven, R.M.; Flot, J.-F.; Buitrago-Lopez, C.; Kochzius, M.</b> (2021). Population genetics of the brooding coral <i>Seriatopora hystrix</i> reveals patterns of strong genetic differentiation in the Western Indian Ocean. <i>Heredity 126(2)</i>: 351-365. <a href=\"https://hdl.handle.net/10.1038/s41437-020-00379-5\" target=\"_blank\">https://hdl.handle.net/10.1038/s41437-020-00379-5</a>","AutID":434554,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":337837,"RR":"<b>Delić, T.; Stoch, F.; Borko, S.; Flot, J.-F.; Fišer, C.</b> (2020). How did subterranean amphipods cross the Adriatic Sea? Phylogenetic evidence for dispersal-vicariance interplay mediated by marine regression-transgression cycles. <i>J. Biogeogr. 47(9)</i>: 1875-1887. <a href=\"https://hdl.handle.net/10.1111/jbi.13875\" target=\"_blank\">https://hdl.handle.net/10.1111/jbi.13875</a>","AutID":434554,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":332571,"RR":"<b>Stoch, F.; Christian, E.; Flot, J.-F.</b> (2020). Molecular taxonomy, phylogeny and biogeography of the <i>Niphargus tatrensis</i> species complex (Amphipoda, Niphargidae) in Austria. <i>Org. Divers. Evol. 20(4)</i>: 701-722. <a href=\"https://dx.doi.org/10.1007/s13127-020-00462-z\" target=\"_blank\">https://dx.doi.org/10.1007/s13127-020-00462-z</a>","AutID":434554,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":323193,"RR":"<b>Banguera-Hinestroza, E.; Ferrada, E.; Sawall, Y.; Flot, J.-F.</b> (2019). Computational characterization of the mtORF of pocilloporid corals: insights into protein structure and function in <i>Stylophora</i> lineages from contrasting environments. <i>Genes 10(5)</i>: 324. <a href=\"https://dx.doi.org/10.3390/genes10050324\" target=\"_blank\">https://dx.doi.org/10.3390/genes10050324</a>","AutID":411265,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":293687,"RR":"<b>Johnston, E.C.; Forsman, Z.H.; Flot, J.-F.; Schmidt-Roach, S.; Pinzón, J.H.; Knapp, I.S.S.; Toonen, R.J.</b> (2017). A genomic glance through the fog of plasticity and diversification in <i>Pocillopora</i>. <i>NPG Scientific Reports 7</i>: 5991. <a href=\"https://dx.doi.org/10.1038/s41598-017-06085-3\" target=\"_blank\">https://dx.doi.org/10.1038/s41598-017-06085-3</a>","AutID":319758,"MonDate":null,"AnaDate":2017,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":293595,"RR":"<b>Voolstra, C.R.; Li, Y.; Liew, Y.J.; Baumgarten, S.; Zoccola, D.; Flot, J.-F.; Tambutté, S.; Allemand, D.; Aranda, M.</b> (2017). Comparative analysis of the genomes of <i>Stylophora pistillata</i> and <i>Acropora digitifera</i> provides evidence for extensive differences between species of corals. <i>NPG Scientific Reports 7</i>: 17583. <a href=\"https://dx.doi.org/10.1038/s41598-017-17484-x\" target=\"_blank\">https://dx.doi.org/10.1038/s41598-017-17484-x</a>","AutID":319758,"MonDate":null,"AnaDate":2017,"PeerRev":1,"outputType":"1_A1","OpenAcc":1}],"Abstr":[{"BRefID":383215,"RR":"<b>Bergacker, S.; Kochzius, M.; Flot, J.-F.</b> (2024). Phylogeography of the semi-pelagic spotted eagle ray (<i>Aetobatus ocellatus</i>), <b><i>in</i></b>: Mees, J. <i>et al.</i> <i>Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication,</i> 91: pp. 53","AutID":516110,"MonDate":null,"AnaDate":2024,"PeerRev":0,"outputType":"6_Abstr","OpenAcc":1}],"ThesisPromotor":[{"BRefID":406087,"RR":"<b>Ramirez-Portilla, C.</b> (2023). Treading thin lines: delineating species boundaries in corals. PhD Thesis. 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