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Adaptation of methane-oxidizing bacteria to environmental changes: implications for coastal methane dynamics. <i>Biogeosciences 22(19)</i>: 5173-5191. <a href=\"https://dx.doi.org/10.5194/bg-22-5173-2025\" target=\"_blank\">https://dx.doi.org/10.5194/bg-22-5173-2025</a>","AutID":376900,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":406299,"RR":"<b>Sow, S.L.S.; van de Poll, W.H.; Eveleth, R.; Rich, J.; Ducklow, H.W.; Rozema, P.D.; Luria, C.; Bolhuis, H.; Meredith, M.P.; Amaral-Zettler, L.A.; Engelmann, J.C.</b> (2025). Spatial and temporal variation of Antarctic microbial interactions: a study around the west Antarctic Peninsula. <i>Environmental Microbiome 20(1)</i>: 21. <a href=\"https://dx.doi.org/10.1186/s40793-025-00663-z\" target=\"_blank\">https://dx.doi.org/10.1186/s40793-025-00663-z</a>","AutID":376900,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":393342,"RR":"<b>Koppelle, S.; Ivankovic, M.; Bengtsson, M.M.; Preiler, C.; Huisman, J.; Brussaard, C.; Engelmann, J.C.; Ptacnik, R.; Wilken, S.</b> (2024). Contrasting responses of different mixotrophic protists to light and nutrient availability. <i>Limnol. Oceanogr. 69(5)</i>: 1233-1246. <a href=\"https://dx.doi.org/10.1002/lno.12565\" target=\"_blank\">https://dx.doi.org/10.1002/lno.12565</a>","AutID":376900,"MonDate":null,"AnaDate":2024,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":396282,"RR":"<b>Yadav, S.; Koenen, M.; Bale, N.; Reitsma, W.; Engelmann, J.C.; Stefanova, K.; Sinninghe Damsté, J.S; Villanueva, L.</b> (2024). Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria. <i>Microbiome 12(1)</i>: 98. <a href=\"https://dx.doi.org/10.1186/s40168-024-01816-x\" target=\"_blank\">https://dx.doi.org/10.1186/s40168-024-01816-x</a>","AutID":376900,"MonDate":null,"AnaDate":2024,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":381115,"RR":"<b>de Groot, T.; Mol, A.M.; Mesdag, K.I.; Ramond, P.; Ndhlovu, R.T.; Engelmann, J.C.; Röckmann, T.; Niemann, H.</b> (2023). Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea. <i>Biogeosciences 20(18)</i>: 3857-3872. <a href=\"https://dx.doi.org/10.5194/bg-20-3857-2023\" target=\"_blank\">https://dx.doi.org/10.5194/bg-20-3857-2023</a>","AutID":376900,"MonDate":null,"AnaDate":2023,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":361139,"RR":"<b>van Duyl, F.C.; van Bleijswijk, J.D.L.; Wuchter, C.; Witte, H.J.; Coolen, M.J.L.; Bak, R.P.M.; Engelmann, J.C.; Nugues, M.M.</b> (2023). Recovery patterns of the coral microbiome after relief of algal contact. <i>J. Sea Res. 191</i>: 102309. <a href=\"https://dx.doi.org/10.1016/j.seares.2022.102309\" target=\"_blank\">https://dx.doi.org/10.1016/j.seares.2022.102309</a>","AutID":376900,"MonDate":null,"AnaDate":2023,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":359808,"RR":"<b>Sahonero Canavesi, D.X.; Siliakus, M.F.; Abdala Asbun, A.; Koenen, M.; von Meijenfeldt, F. A.B.; Boeren, S.; Bale, N.J.; Engelmann, J.C.; Fiege, K.; Strack van Schijndel, L.; Sinninghe Damsté, J.S.; Villanueva, L.</b> (2022). Disentangling the lipid divide: Identification of key enzymes for the biosynthesis of membrane-spanning and ether lipids in bacteria. <i>Science Advances 8(50)</i>. <a href=\"https://dx.doi.org/10.1126/sciadv.abq8652\" target=\"_blank\">https://dx.doi.org/10.1126/sciadv.abq8652</a>","AutID":376900,"MonDate":null,"AnaDate":2022,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":339457,"RR":"<b>Amaral-Zettler, L.A.; Ballerini, T.; Zettler, E.R.; Abdala Asbun, A.; Adame, A.; Casotti, R.; Dumontet, B.; Donnarumma, V.; Engelmann, J.C.; Frère, L.; Mansui, J.; Philippon, M.; Pietrelli, L.; Sighicelli, M.</b> (2021). Diversity and predicted inter- and intra-domain interactions in the Mediterranean Plastisphere. <i>Environ. Pollut. 286</i>: 117439. <a href=\"https://dx.doi.org/10.1016/j.envpol.2021.117439\" target=\"_blank\">https://dx.doi.org/10.1016/j.envpol.2021.117439</a>","AutID":376901,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":339344,"RR":"<b>Linck-Paulus, L.; Lämmerhirt, L.; Völler, D.; Meyer, K.; Engelmann, J.C.; Spang, R.; Eichner, N.; Meister, G.; Kuphal, S.; Bosserhoff, A.K.</b> (2021). Learning from embryogenesis: a comparative expression analysis in melanoblast differentiation and tumorigenesis reveals miRNAs driving melanoma development. <i>Journal of Clinical Medicine 10(11)</i>: 2259. <a href=\"https://dx.doi.org/10.3390/jcm10112259\" target=\"_blank\">https://dx.doi.org/10.3390/jcm10112259</a>","AutID":376900,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":339912,"RR":"<b>Vaksmaa, A.; Knittel, K.; Abdala Asbun, A.; Goudriaan, M.; Ellrott, A.; Witte, H.J.; Vollmer, I.; Meirer, F.; Lott, C.; Weber, M.; Engelmann, J.C.; Niemann, H.</b> (2021). Microbial communities on plastic polymers in the Mediterranean Sea. <i>Front. Microbiol. 12</i>: 673553. <a href=\"https://dx.doi.org/10.3389/fmicb.2021.673553\" target=\"_blank\">https://dx.doi.org/10.3389/fmicb.2021.673553</a>","AutID":376900,"MonDate":null,"AnaDate":2021,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":331941,"RR":"<b>Abdala Asbun, A.; Besseling, M.A.; Balzano, S.; van Bleijswijk, J.D.L.; Witte, H.J.; Villanueva, L.; Engelmann, J.C.</b> (2020). <i>Cascabel</i>: A scalable and versatile amplicon sequence data analysis pipeline delivering reproducible and documented results. <i>Frontiers in Genetics 11</i>: 489357. <a href=\"https://doi.org/10.3389/fgene.2020.489357\" target=\"_blank\">https://doi.org/10.3389/fgene.2020.489357</a>","AutID":376901,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":319586,"RR":"<b>Arnold, J.; Engelmann, J.C.; Schneider, N.; Bosserhoff, A.K.; Kuphal, S.</b> (2020). miR-488-5p and its role in melanoma. <i>Experimental and Molecular Pathology 112</i>: 104348. <a href=\"https://dx.doi.org/10.1016/j.yexmp.2019.104348\" target=\"_blank\">https://dx.doi.org/10.1016/j.yexmp.2019.104348</a>","AutID":376900,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":320899,"RR":"<b>van Grinsven, S.; Sinninghe Damsté, J.S; Abdala Asbun, A.; Engelmann, J.C.; Harrison, J.; Villanueva, L.</b> (2020). Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition. <i>Environ. Microbiol. 22(2)</i>: 766-782. <a href=\"https://dx.doi.org/10.1111/1462-2920.14886\" target=\"_blank\">https://dx.doi.org/10.1111/1462-2920.14886</a>","AutID":376900,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":310966,"RR":"<b>Balzano, S.; Villanueva, L.; de Bar, M.; Sahonero Canavesi, D.X.; Yildiz, C.; Engelmann, J.C.; Maréchal, E.; Lupette, J.; Sinninghe Damsté, J.S.; Schouten, S.</b> (2019). Biosynthesis of long chain alkyl diols and long chain alkenols in <i>Nannochloropsis</i> spp. (Eustigmatophyceae). <i>Plant Cell Physiol. 60(8)</i>: 1666-1682. <a href=\"https://dx.doi.org/10.1093/pcp/pcz078\" target=\"_blank\">https://dx.doi.org/10.1093/pcp/pcz078</a>","AutID":376900,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":355354,"RR":"<b>Kleo, K.; Dimitrova, L.; Oker, E.; Tomaszewski, N.; Van den Bergh, E.; Taruttis, F.; Engelmann, J.C.; Schwarzfischer, P.; Reinders, J.; Spang, R.; Gronwald, W.; Oefner, P.J.; Hummel, M.</b> (2019). Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma. <i>Bmc Cancer 19(1)</i>. <a href=\"https://dx.doi.org/10.1186/s12885-019-5537-0\" target=\"_blank\">https://dx.doi.org/10.1186/s12885-019-5537-0</a>","AutID":502387,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":0},{"BRefID":310962,"RR":"<b>Pérez-Rubio, P.; Lottaz, C.; Engelmann, J.C.</b> (2019). FastqPuri: high-performance preprocessing of RNA-seq data. <i>BMC Bioinformatics 20(1)</i>: 226. <a href=\"https://dx.doi.org/10.1186/s12859-019-2799-0\" target=\"_blank\">https://dx.doi.org/10.1186/s12859-019-2799-0</a>","AutID":376901,"MonDate":null,"AnaDate":2019,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":355317,"RR":"<b>Deeken, R.; Engelmann, J.C.; Efetova, M.; Czirjak, T.; Müller, T.; Kaiser, W.M.; Tietz, O.; Krischke, M.; Mueller, M.J.; Palme, K.; Dandekar, T.; Hedrich, R.</b> (2006). An integrated view of gene expression and solute profiles of <i>Arabidopsis</i> tumors: A genome-wide approach. <i>Plant Cell 18(12)</i>: 3617-3634. <a href=\"https://dx.doi.org/10.1105/tpc.106.044743\" target=\"_blank\">https://dx.doi.org/10.1105/tpc.106.044743</a>","AutID":502387,"MonDate":null,"AnaDate":2006,"PeerRev":1,"outputType":"1_A1","OpenAcc":0}],"PeerRevRef":[{"BRefID":323688,"RR":"<b>van Bleijswijk, J.D.L.; Engelmann, J.C.; Klunder, L.; Witte, H.J.; Witte, J.IJ.; van der Veer, H.W.</b> (2020). Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches. <i>Environmental DNA 2(4)</i>: 429-445. <a href=\"https://dx.doi.org/10.1002/edn3.67\" target=\"_blank\">https://dx.doi.org/10.1002/edn3.67</a>","AutID":376900,"MonDate":null,"AnaDate":2020,"PeerRev":1,"outputType":"2_PeerRevRef","OpenAcc":1}],"Abstr":[{"BRefID":365113,"RR":"<b>Delre, A.; de Groot, T.; Röckmann, T.; Engelmann, J.; Reichart, G.-J.; Niemann, H.</b> (2023). Methane oxidation in the estuary of a medium-sized European river, the Scheldt, <b><i>in</i></b>: <i>EGU General Assembly 2023. Vienna, Austria & Online, 23–28 April 2023.</i> pp. EGU23-11959. <a href=\"https://dx.doi.org/10.5194/egusphere-egu23-11959\" target=\"_blank\">https://dx.doi.org/10.5194/egusphere-egu23-11959</a>","AutID":533547,"MonDate":null,"AnaDate":2023,"PeerRev":0,"outputType":"6_Abstr","OpenAcc":1}]},"urls":[{"URL":"https://orcid.org/0000-0002-4160-5474","externalID":"0000-0002-4160-5474","URLTypeCode":"ORCID","URLType":"ORCID"},{"URL":"www.nioz.nl/en/about/organisation/staff/julia-engelmann","externalID":null,"URLTypeCode":null,"URLType":"Personal home page"}],"spcols":null,"thesterms":null,"taxterms":null,"pub":1,"newses":{"SesID":94572,"LoginName":"VLIZ2000\\ruthv","LoginID":79,"DD":"2019-05-22"},"updses":{"SesID":94572,"LoginName":"VLIZ2000\\ruthv","LoginID":79,"DD":"2019-05-22"},"urlmaps":[],"resmessage":"no id specified","complete":1}