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Next release of the European Marine Omics Biodiversity Observation Network (EMO BON) shotgun metagenomic data from water and sediment samples (Release 2). <i>Biodiversity Data Journal 14<\/i>: e178484. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.14.e178484\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.14.e178484<\/a>","AutID":476645,"MonDate":null,"AnaDate":2026,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":412293,"RR":"<b>Azmi, E.; Alibabaei, K.; Kozlov, V.; Krijger, T.; Accarino, G.; Ayata, S.-D.; Calatrava, A.; De Carlo, M.M.; Decrop, W.; Elia, D.; Fiore, L.; Francescangeli, M.; Irisson, J.-O.; Lagaisse, R.; Laviale, M.; Lebeaud, A.; Leluschko, C.; Mart\u00ednez, E.; Molt\u00f3, G.; Atake, I.R.; Antonio Augusto, S.N.; Damian, S.; Jesus, S.-G.; Tayyab, M.A.; Tosello, V.; L\u00f3pez Garc\u00eda, A.; Schaap, D.; Sipos, G.<\/b> (2025). Best practices for AI-based image analysis applications in aquatic sciences: The iMagine case study. <i>Ecological Informatics 91<\/i>: 103306. <a href=\"https:\/\/dx.doi.org\/10.1016\/j.ecoinf.2025.103306\" target=\"_blank\">https:\/\/dx.doi.org\/10.1016\/j.ecoinf.2025.103306<\/a>","AutID":595439,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":436780,"RR":"<b>Decrop, W.; Lagaisse, R.; Mortelmans, J.; Mu\u00f1iz, C.; Heredia, I.; Calatrava, A.; Deneudt, K.<\/b> (2025). Automated image classification workflow for phytoplankton monitoring. <i>Front. Mar. Sci. 12<\/i>: 1699781. <a href=\"https:\/\/dx.doi.org\/10.3389\/fmars.2025.1699781\" target=\"_blank\">https:\/\/dx.doi.org\/10.3389\/fmars.2025.1699781<\/a>","AutID":595439,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":436782,"RR":"<b>Lagaisse, R.; Dillen, N.; Bakeev, D.; Decrop, W.; Focke, P.; Mortelmans, J.; Muyle, J.; Deneudt, K.<\/b> (2025). Advancing long-term phytoplankton biodiversity assessment in the North Sea using an imaging approach. <i>Scientific Data 12<\/i>: 1989. <a href=\"https:\/\/dx.doi.org\/10.1038\/s41597-025-06278-w\" target=\"_blank\">https:\/\/dx.doi.org\/10.1038\/s41597-025-06278-w<\/a>","AutID":476645,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":436106,"RR":"<b>Pagnier, Justine; Allcock, Louise; Cancio, Ibon; Chatzinikolaou, Eva; Chatzigeorgiou, Giorgos; Chrismas, Nathan; Costantini, Federica; Dailianis, Thanos; Deneudt, Klaas; D\u00edaz de Cerio, Oihane; Digenis, Markos; Exter, Katrina; Gerovasileiou, Vasilis; Gonz\u00e1lez Fern\u00e1ndez, Jose; Kauppi, Laura; Keklikoglou, Kleoniki; Kristoffersen, Jon Bent; Lagaisse, Rune; Mavri\u010d, Borut; Mortelmans, Jonas; Paredes, Estefania; Pavloudi, Christina; Piazza, Alessandro; Power, Anne Marie; Ram\u0161ak, Andreja; Santi, Ioulia; Solbakken, Jostein; Stavroulaki, Melanthia; St\u00e6hr, Peter; Tajadura, Javier; Souza Troncoso, Jesus; Vasileiadou, Katerina; Vernadou, Emmanouela; Obst, Matthias<\/b> (2025). A long-term ecological research dataset from the marine genetic monitoring programme ARMS-MBON 2020-2021. <i>Biodiversity Data Journal 13<\/i>: e148981. <a href=\"https:\/\/dx.doi.org\/10.3897\/bdj.13.e148981\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/bdj.13.e148981<\/a>","AutID":476645,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":406030,"RR":"<b>Pavloudi, C.; Santi, I.; Azua, I.; Ba\u00f1a, Z.; Bastianini, M.; Belser, C.; Bilbao, J.; Bitz-Thorsen, J.; Broudin, C.; Camusat, M.; Cancio, I.; Caray-Counil, L.; Casotti, R.; Castel, J.; Comtet, T.; Cox, C.J.; Daguin, C.; D\u00edaz, O.; Diaz de Cerio, O.; Exter, K.; Fauvelot, C.; Frada, M.J.; Galand, P.E.; Garczarek, L.; Gonz\u00e1lez Fern\u00e1ndez, J.; Guillou, L.; Habl\u00fctzel, P.I.; Heynderickx, H.; Houbin, C.; Kervella, A.E.; Krystallas, A.; Lagaisse, R.; Laroquette, A.; Lescure, L.; Lopes, E.; Loulakaki, M.; Louro, B.; Magalh\u00e3es, C.; Maidanou, M.; Margiotta, F.; Montresor, M.; Not, F.; Paredes, E.; Percopo, I.; P\u00e9ru, E.; Poulain, J.; Praebel, K.; Rigaut-Jalabert, F.; Romac, S.; Stavroulaki, M.; Troncoso, J.S.; Thiebaut, E.; Thomas, W.; Tkacz, A.; Trano, A.C.; Wincker, P.; Pade, N.<\/b> (2025). First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples. <i>Biodiversity Data Journal 13<\/i>: e143585. <a href=\"https:\/\/dx.doi.org\/10.3897\/BDJ.13.e143585\" target=\"_blank\">https:\/\/dx.doi.org\/10.3897\/BDJ.13.e143585<\/a>","AutID":582589,"MonDate":null,"AnaDate":2025,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":393957,"RR":"<b>Mortelmans, J.; Semmouri, I.; Perneel, M.; Lagaisse, R.; Amadei Mart\u00ednez, L.; Rommelaere, Z.; Habl\u00fctzel, P.; Deneudt, K.<\/b> (2024). Temperature-induced copepod depletion and the associated wax of <i>Bellerochea<\/i> in Belgian coastal waters: Implications and shifts in plankton dynamics. <i>J. Sea Res. 201<\/i>: 102523. <a href=\"https:\/\/dx.doi.org\/10.1016\/j.seares.2024.102523\" target=\"_blank\">https:\/\/dx.doi.org\/10.1016\/j.seares.2024.102523<\/a>","AutID":476645,"MonDate":null,"AnaDate":2024,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":393213,"RR":"<b>Perneel, M.; Lagaisse, R.; Mortelmans, J.; Maere, S.; Habl\u00fctzel, P.<\/b> (2024). 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Sci. 10(1118120)<\/i>: 1-13. <a href=\"https:\/\/dx.doi.org\/10.3389\/fmars.2023.1118120\" target=\"_blank\">https:\/\/dx.doi.org\/10.3389\/fmars.2023.1118120<\/a>","AutID":476645,"MonDate":null,"AnaDate":2023,"PeerRev":1,"outputType":"1_A1","OpenAcc":1},{"BRefID":348789,"RR":"<b>Habl\u00fctzel, P.I.; Rombouts, I.; Dillen, N.; Lagaisse, R.; Mortelmans, J.; Ollevier, A.; Perneel, M.; Deneudt, K.<\/b> (2021). Exploring new technologies for plankton observations and monitoring of ocean health, <b><i>in<\/i><\/b>: Kappel, E.S. <i>et al.<\/i> <i>Frontiers in ocean observing: Documenting ecosystems, understanding environmental changes, forecasting hazards. 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Samenvatting van de staat van het marien milieu, <b><i>in<\/i><\/b>: Belgische Staat <i>Mariene Strategie Deel 1 voor de Belgische mariene wateren. Staat van Belgische mariene wateren, goede milieutoestand en milieudoelen. Kaderrichtlijn Mariene Strategie - Artikel 8, 9 en 10.<\/i> pp. 11-60","AutID":476645,"MonDate":null,"AnaDate":2025,"PeerRev":0,"outputType":"4_BookChap","OpenAcc":1},{"BRefID":418573,"RR":"<b>Decrop, W.; Lagaisse, R.; Mortelmans, J.; Mu\u00f1iz, C.; Deneudt, K.<\/b> (2025). Design and implementation of an automated Image classification workflow for phytoplankton monitoring, <b><i>in<\/i><\/b>: Praet, N. <i>et al.<\/i> <i>Particles in Europe 2025: Conference program and proceedings, 17 - 19 September 2025, Ostend, Belgium.<\/i> pp. 62-70","AutID":476645,"MonDate":null,"AnaDate":2025,"PeerRev":0,"outputType":"4_BookChap","OpenAcc":1}],"Thesis":[{"BRefID":329304,"RR":"<b>Lagaisse, R.<\/b> (2020). 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AI in marine sciences: an open-access integrated environment for automated classification of phytoplankton images, <b><i>in<\/i><\/b>: Mees, J. <i>et al.<\/i> <i>Book of abstracts \u2013 VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication,<\/i> 91: pp. 82","AutID":557639,"MonDate":null,"AnaDate":2024,"PeerRev":0,"outputType":"6_Abstr","OpenAcc":1},{"BRefID":361272,"RR":"<b>Ollevier, A.; Ponsoni, L.; Develter, R.; Mortelmans, J.; Lagaisse, R.; De Troch, M.; Habl\u00fctzel, P.; Boone, W.<\/b> (2023). Oceanic drivers, nutrient dynamics and plankton communities in West-Greenland\u2019s fjord system: A multidisciplinary study, <b><i>in<\/i><\/b>: Mees, J. <i>et al.<\/i> <i>Book of abstracts \u2013 VLIZ Marine Science Day, 1 March 2023, Bruges. 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