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Absolute quantification of microbial taxon abundances. ISME J. 11(2): 584-587. https://dx.doi.org/10.1038/ismej.2016.117","StandardTitle":"Absolute quantification of microbial taxon abundances","AuthorsString":"Props, R. et al.","BibLvlCode":"AS"},{"BRefID":295575,"RR":"Eronen-Rasimus, E.; Luhtanen, A.-M.; Rintala, J.-M.; Delille, B.; Dieckmann, G.; Karkman, A.; Tison, J.-L. (2017). An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community. ISME J. 11(10): 2345-2355. https://dx.doi.org/10.1038/ismej.2017.96","StandardTitle":"An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community","AuthorsString":"Eronen-Rasimus, E. et al.","BibLvlCode":"AS"},{"BRefID":314145,"RR":"Schwank, K.; Bornemann, T.L.V.; Dombrowski, N.; Spang, A.; Banfield, J.F.; Probst, A. (2019). An archaeal symbiont-host association from the deep terrestrial subsurface. ISME J. 13(8): 2135-2139. https://dx.doi.org/10.1038/s41396-019-0421-0","StandardTitle":"An archaeal symbiont-host association from the deep terrestrial subsurface","AuthorsString":"Schwank, K. et al.","BibLvlCode":"AS"},{"BRefID":231229,"RR":"Bolhuis, H.; Stal, L.J. (2011). Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing. ISME J. 5(11): 1701-1712. dx.doi.org/10.1038/Ismej.2011.52","StandardTitle":"Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing","AuthorsString":"Bolhuis, H.; Stal, L.J.","BibLvlCode":"AS"},{"BRefID":287979,"RR":"Bowman, J.S.; Amaral-Zettler, L.A.; Rich, J.; Luria, C.; Ducklow, H.W. (2017). Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula. ISME J. 11(6): 1460-1471. https://dx.doi.org/10.1038/ismej.2016.204","StandardTitle":"Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula","AuthorsString":"Bowman, J.S. et al.","BibLvlCode":"AS"},{"BRefID":285409,"RR":"Sarmento, H.; Morana, C.; Gasol, J.M. (2016). Bacterioplankton niche partitioning in the use of phytoplankton-derived dissolved organic carbon: quantity is more important than quality. ISME J. 10(11): 2582-2592. https://dx.doi.org/10.1038/ismej.2016.66","StandardTitle":"Bacterioplankton niche partitioning in the use of phytoplankton-derived dissolved organic carbon: quantity is more important than quality","AuthorsString":"Sarmento, H. et al.","BibLvlCode":"AS"},{"BRefID":288376,"RR":"Bertics, V.J.; Ziebis, W. (2009). Biodiversity of benthic microbial communities in bioturbated coastal sediments is controlled by geochemical microniches. ISME J. 3(11): 1269-1285. https://dx.doi.org/10.1038/ismej.2009.62","StandardTitle":"Biodiversity of benthic microbial communities in bioturbated coastal sediments is controlled by geochemical microniches","AuthorsString":"Bertics, V.J.; Ziebis, W.","BibLvlCode":"AS"},{"BRefID":311576,"RR":"Beam, J.P.; Scott, J.J.; McAllister, S.M.; Chan, C.S.; McManus, J.; Meysman, F.J.R.; Emerson, D. (2018). Biological rejuvenation of iron oxides in bioturbated marine sediments. ISME J. 12(5): 1389-1394. https://dx.doi.org/10.1038/s41396-017-0032-6","StandardTitle":"Biological rejuvenation of iron oxides in bioturbated marine sediments","AuthorsString":"Beam, J.P. et al.","BibLvlCode":"AS"},{"BRefID":329922,"RR":"Villanueva, L.; von Meijenfeldt, F.A.B.; Westbye, A.B.; Yadav, S.; Hopmans, E.C.; Dutilh, B.E.; Sinninghe Damsté, J.S (2021). Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids. ISME J. 15: 168-182. https://dx.doi.org/10.1038/s41396-020-00772-2","StandardTitle":"Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids","AuthorsString":"Villanueva, L. et al.","BibLvlCode":"AS"},{"BRefID":361353,"RR":"Bizic, M.; Brad, T.; Ionescu, D.; Barbu-Tudoran, L.; Zoccarato, L.; Aerts, J.W.; Contarini, P.-E.; Gros, O.; Volland, J.-M.; Popa, R.; Ody, J.; Vellone, D.; Flot, J.-F.; Tighe, S.; Sarbu, S.M. (2023). Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species. ISME J. 17: 340-353. https://dx.doi.org/10.1038/s41396-022-01350-4","StandardTitle":"Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species","AuthorsString":"Bizic, M. et al.","BibLvlCode":"AS"},{"BRefID":226267,"RR":"Gsell, A.S.; de Senerpont Domis, L.N.; verhoeven, K.J.; Van Donk, E.; Ibelings, B.W. (2013). Chytrid epidemics may increase genetic diversity of a diatom spring-bloom. ISME J. 7(10): 2057-2059. https://dx.doi.org/10.1038/ismej.2013.73","StandardTitle":"Chytrid epidemics may increase genetic diversity of a diatom spring-bloom","AuthorsString":"Gsell, A.S. et al.","BibLvlCode":"AS"},{"BRefID":317467,"RR":"Stomp, M.; Huisman, J.; Stal, L.J.; Matthijs, H.C.P. (2007). Colorful niches of phototrophic microorganisms shaped by vibrations of the water molecule. ISME J. 1(4): 271-282. https://dx.doi.org/10.1038/ismej.2007.59","StandardTitle":"Colorful niches of phototrophic microorganisms shaped by vibrations of the water molecule","AuthorsString":"Stomp, M. et al.","BibLvlCode":"AS"},{"BRefID":337399,"RR":"Labarre, A.; López-Escardó, D.; Latorre, F.; Leonard, G.; Bucchini, F.; Obiol, A.; Cruaud, C.; Sieracki, M.E.; Jaillon, O.; Wincker, P.; Vandepoele, K.; Logares, R.; Massana, R. (2021). Comparative genomics reveals new functional insights in uncultured MAST species. ISME J. 15: 1767-1781. https://hdl.handle.net/10.1038/s41396-020-00885-8","StandardTitle":"Comparative genomics reveals new functional insights in uncultured MAST species","AuthorsString":"Labarre, A. et al.","BibLvlCode":"AS"},{"BRefID":289366,"RR":"Balzano, S.; Marie, D.; Gourvil, P.; Vaulot, D. (2012). Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples. ISME J. 6(8): 1480-1498. https://dx.doi.org/10.1038/ismej.2011.213","StandardTitle":"Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples","AuthorsString":"Balzano, S. et al.","BibLvlCode":"AS"},{"BRefID":218593,"RR":"Yakimov, M.M.; La Cono, V.; Smedile, F.; DeLuca, T.H.; Juárez, S.; Ciordia, S.; Fernández, M.; Albar, J.P.; Ferrer, M.; Golyshin, P.N.; Giuliano, L. (2011). Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea). ISME J. 5(6): 945-961. http://dx.doi.org/10.1038/ismej.2010.197","StandardTitle":"Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)","AuthorsString":"Yakimov, M.M. et al.","BibLvlCode":"AS"},{"BRefID":362308,"RR":"Moynihan, M.A.; Goodkin, N.F.; Morgan, K.M.; Kho, P.Y.Y.; dos Santos, A.L.; Lauro, F.M.; Baker, D.M.; Martin, P. (2022). Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef. ISME J. 16(1): 233-246. https://dx.doi.org/10.1038/s41396-021-01054-1","StandardTitle":"Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef","AuthorsString":"Moynihan, M.A. et al.","BibLvlCode":"AS"},{"BRefID":332287,"RR":"Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W. (2021). Cytometric fingerprints of gut microbiota predict Crohn’s disease state. ISME J. 15(1): 354-358. https://dx.doi.org/10.1038/s41396-020-00762-4","StandardTitle":"Cytometric fingerprints of gut microbiota predict Crohn’s disease state","AuthorsString":"Rubbens, P. et al.","BibLvlCode":"AS"},{"BRefID":310392,"RR":"Bondoc, K.G.V.; Lembke, C.; Lang, S.N.; Germerodt, S.; Schuster, S.; Vyverman, W.; Pohnert, G. (2019). Decision-making of the benthic diatom Seminavis robusta searching for inorganic nutrients and pheromones. ISME J. 13(2): 537-546. https://dx.doi.org/10.1038/s41396-018-0299-2","StandardTitle":"Decision-making of the benthic diatom Seminavis robusta searching for inorganic nutrients and pheromones","AuthorsString":"Bondoc, K.G.V. et al.","BibLvlCode":"AS"},{"BRefID":261489,"RR":"Neave, M.J.; Rachmawati, R.; Xun, L.; Michell, C.T.; Bourne, D.G.; Apprill, A.; Voolstra, C.R. (2017). Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. ISME J. 11(1): 186-200. https://dx.doi.org/10.1038/ismej.2016.95","StandardTitle":"Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales","AuthorsString":"Neave, M.J. et al.","BibLvlCode":"AS"},{"BRefID":231048,"RR":"Pfreundt, U.; Stal, L.J.; Voss, B.; Hess, W.R. (2012). Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium. ISME J. 6(7): 1367-1377. dx.doi.org/10.1038/ismej.2011.199","StandardTitle":"Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium","AuthorsString":"Pfreundt, U. et al.","BibLvlCode":"AS"},{"BRefID":362765,"RR":"Babbin, A.R.; Tamasi, T.; Dumit, D.; Weber, L.; Rodriguez, M.V.I.; Schwartz, S.L.; Armenteros, M.; Wankel, S.D.; Apprill, A. (2021). Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals. ISME J. 15(4): 1222-1235. https://dx.doi.org/10.1038/s41396-020-00845-2","StandardTitle":"Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals","AuthorsString":"Babbin, A.R. et al.","BibLvlCode":"AS"},{"BRefID":284948,"RR":"Sorokin, D.Y.; Messina, E.; Smedile, F; Roman, P.; Sinninghe Damsté, J.S.; Ciordia, S.; Mena, M.C.; Ferrer, M.; Golyshin, P.N.; Kublanov, I.V.; Samarov, N.I.; Toshchakov, S.V.; La Cono, V.; Yakimov, M.M. (2017). Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats. ISME J. 11: 1245-1260. https://dx.doi.org/10.1038/ismej.2016.203","StandardTitle":"Discovery of anaerobic lithoheterotrophic haloarchaea, ubiquitous in hypersaline habitats","AuthorsString":"Sorokin, D.Y. et al.","BibLvlCode":"AS"},{"BRefID":368079,"RR":"Jian, H.; Yin, Y.; Wang, J.; Hao, Y.; Zhang, M.; Wang, S.; Meng, C.; Zhang, Y.; Jing, H.; Wang, Y.; Xiao, X. (2021). Diversity and distribution of viruses inhabiting the deepest ocean on Earth. ISME J. 15(10): 3094-3110. https://dx.doi.org/10.1038/s41396-021-00994-y","StandardTitle":"Diversity and distribution of viruses inhabiting the deepest ocean on Earth","AuthorsString":"Jian, H. et al.","BibLvlCode":"AS"},{"BRefID":321324,"RR":"Hoffmann, K.; Bienhold, C.; Buttigieg, P.L.; Knittel, K.; Laso-Pérez, R.; Rapp, J.Z.; Boetius, A.; Offre, P. (2020). Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. ISME J. 14: 1042-1056. https://dx.doi.org/10.1038/s41396-020-0588-4","StandardTitle":"Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities","AuthorsString":"Hoffmann, K. et al.","BibLvlCode":"AS"},{"BRefID":329633,"RR":"Man-Aharonovich, D.; Philosof, A.; Kirkup, B.C.; Le Gall, F.; Yogev, T.; Berman-Frank, I.; Polz, M.F.; Vaulot, D.; Béjà, O. (2010). Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J. 4(8): 1044-1052. https://dx.doi.org/10.1038/ismej.2010.25","StandardTitle":"Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts","AuthorsString":"Man-Aharonovich, D. et al.","BibLvlCode":"AS"},{"BRefID":409723,"RR":"Ni, Xue-Bing; Pei, Yao; Ye, Yong-Tao; Shum, Marcus Ho-Hin; Cui, Xiao-Ming; Wu, Yu-Qian; Pierce, Mac P; Zhao, Lin; Wang, Gong-Pei; Wei, Jia-Te; Fan, Jing-Li; Wang, Qian; Smith, David K; Sun, Yi; Du, Li-Feng; Zhang, Jie; Jiang, Jia-Fu; He, Pei-Jun; Chen, Xin; Wei, Hua; Zhao, Ning-Qi; Cao, Wu-Chun; Lam, Tommy Tsan-Yuk; Jia, Na; Tick Genome and Microbiome Consortium (2024). Ecoclimate drivers shape virome diversity in a globally invasive tick species. ISME J. 18(1): 1-12. https://dx.doi.org/10.1093/ismejo/wrae087","StandardTitle":"Ecoclimate drivers shape virome diversity in a globally invasive tick species","AuthorsString":"Ni, Xue-Bing et al.","BibLvlCode":"AS"},{"BRefID":418901,"RR":"Krzynowek, A.; Van de Moortel, B.; Pichler, N.; Vanoverberghe, I.; Lapere, J.; Jenisch, L.M.; Deloof, D.; Thielemans, W.; Muylaert, K.; Dusselier, M.; Springael, D.; Faust, K.; Decaestecker, E. (2025). Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro. ISME J. 19(1): wrae234. https://dx.doi.org/10.1093/ismejo/wrae234","StandardTitle":"Effects of microplastics on Daphnia-associated microbiomes in situ and in vitro","AuthorsString":"Krzynowek, A. et al.","BibLvlCode":"AS"},{"BRefID":308660,"RR":"Hartmann, M.; Gomez-Pereira, P.; Grob, C.; Ostrowski, M.; Scanlan, D.J.; Zubkov, M.V. (2014). Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean. ISME J. 8(11): 2280-2289. https://dx.doi.org/10.1038/ismej.2014.56","StandardTitle":"Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean","AuthorsString":"Hartmann, M. et al.","BibLvlCode":"AS"},{"BRefID":338817,"RR":"Srivastava, A.; Saavedra, D.E.M.; Thomson, B.; Garcia, J.A.L.; Zhao, Z.; Patrick, W.M.; Herndl, G.J.; Baltar, F. (2021). Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean. ISME J. 15: 3375-3383. https://doi.org/10.1038/s41396-021-01013-w","StandardTitle":"Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean","AuthorsString":"Srivastava, A. et al.","BibLvlCode":"AS"},{"BRefID":259130,"RR":"Hingamp, P.; Grimsley, N.; Acinas, S.G.; Clerissi, C.; Subirana, L.; Poulain, J.; Ferrera, I.; Sarmento, H.; Villar, E.; Lima-Mendez, G.; Faust, K.; Sunagawa, S.; Claverie, J.-M.; Moreau, H.; Desdevises, Y.; Bork, P.; Raes, J.; de Vargas, C.; Karsenti, E.; Kandels-Lewis, S.; Jaillon, O.; Not, F.; Pesant, S.; Wincker, P.; Ogata, H. (2013). Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J. 7(9): 1678-1695. https://dx.doi.org/10.1038/ismej.2013.59","StandardTitle":"Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes","AuthorsString":"Hingamp, P. et al.","BibLvlCode":"AS"},{"BRefID":337675,"RR":"Massana, R.; Labarre, A.; López-Escardó, D.; Obiol, A.; Bucchini, F.; Hackl, T.; Fischer, M.G.; Vandepoele, K.; Tikhonenkov, D.V.; Husnik, F.; Keeling, P.J. (2021). Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. ISME J. 15(1): 154-167. https://hdl.handle.net/10.1038/s41396-020-00770-4","StandardTitle":"Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate","AuthorsString":"Massana, R. et al.","BibLvlCode":"AS"},{"BRefID":253007,"RR":"Ladau, J.; Sharpton, T.J.; Finucane, M.M.; Jospin, G.; Kembel, S.W.; O'Dwyer, J.; Koeppel, A.F.; Green, J.L.; Pollard, K.S. (2013). Global marine bacterial diversity peaks at high latitudes in winter. ISME J. 7(9): 1669-1677. dx.doi.org/10.1038/ismej.2013.37","StandardTitle":"Global marine bacterial diversity peaks at high latitudes in winter","AuthorsString":"Ladau, J. et al.","BibLvlCode":"AS"},{"BRefID":246802,"RR":"Barnett, A; Meleder, V; Blommaert, L.; Lepetit, B; Gaudin, P; Vyverman, W.; Sabbe, K.; Dupuy, C; Lavaud, J (2015). Growth form defines physiological photoprotective capacity in intertidal benthic diatoms. ISME J. 9(1): 32-45. dx.doi.org/10.1038/ismej.2014.105","StandardTitle":"Growth form defines physiological photoprotective capacity in intertidal benthic diatoms","AuthorsString":"Barnett, A et al.","BibLvlCode":"AS"},{"BRefID":329972,"RR":"Rix, L.; Ribes, M.; Coma, R.; Jahn, M.T.; de Goeij, J.M.; van Oevelen, D.; Escrig; Meibom, A.; Hentschel, U. (2020). Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses. ISME J. 14(10): 2554-2567. https://dx.doi.org/10.1038/s41396-020-0706-3","StandardTitle":"Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses","AuthorsString":"Rix, L. et al.","BibLvlCode":"AS"},{"BRefID":363233,"RR":"Marcelino, V.R.; van Oppen, M.J.H.; Verbruggen, H. (2018). Highly structured prokaryote communities exist within the skeleton of coral colonies. ISME J. 12(1): 300-303. https://dx.doi.org/10.1038/ismej.2017.164","StandardTitle":"Highly structured prokaryote communities exist within the skeleton of coral colonies","AuthorsString":"Marcelino, V.R.; van Oppen, M.J.H.; Verbruggen, H.","BibLvlCode":"AS"},{"BRefID":405272,"RR":"Varona, N.S.; Hesketh-Best, P.J.; Coutinho, F.H.; Stiffler, A.K.; Wallace, B.A.; Garcia, S.L.; Scholten, Y.; Haas, A.F.; Little, M.; Vermeij, M.J.A.; Luque, A.; Silveira, C.B. (2024). Host-specific viral predation network on coral reefs. 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ISME J. 2(3): 335-339. dx.doi.org/10.1038/ismej.2007.91","StandardTitle":"Identification of the bacterial symbiont Entotheonella sp. in the mesohyl of the marine sponge Discodermia sp.","AuthorsString":"Bruck, W. et al.","BibLvlCode":"AS"},{"BRefID":284400,"RR":"Chen, J.; Hanke, A.; Tegetmeyer, H.E.; Kattelmann, I.; Sharma, R.; Hamann, E.; Hargesheimer, T.; Kraft, B.; Lenk, S.; Geelhoed, J.S.; Hettich, R.L.; Strous, M. (2017). Impacts of chemical gradients on microbial community structure. ISME J. 11(4): 920-931. dx.doi.org/10.1038/ismej.2016.175","StandardTitle":"Impacts of chemical gradients on microbial community structure","AuthorsString":"Chen, J. et al.","BibLvlCode":"AS"},{"BRefID":219679,"RR":"Ponsard, J.; Cambon Bonavita, M.-A.; Zbinden, M.; Lepoint, G.; Joassin, A.; Corbari, L.; Shillito, B.; Durand, L.; Cueff-Gauchard, V.; Compère, P. (2013). 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Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME J. 6(8): 1566-1577. dx.doi.org/10.1038/ismej.2011.214","StandardTitle":"Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect","AuthorsString":"De Corte, D. et al.","BibLvlCode":"AS"},{"BRefID":381354,"RR":"Sharp, K.H.; Davidson, S.K.; Haygood, M.G. (2007). Localization of ‘Candidatus Endobugula sertula’ and the bryostatins throughout the life cycle of the bryozoan Bugula neritina. ISME J. 1(8): 693-702. https://dx.doi.org/10.1038/ismej.2007.78","StandardTitle":"Localization of ‘Candidatus Endobugula sertula’ and the bryostatins throughout the life cycle of the bryozoan Bugula neritina","AuthorsString":"Sharp, K.H.; Davidson, S.K.; Haygood, M.G.","BibLvlCode":"AS"},{"BRefID":240630,"RR":"Brauer, V.S.; Stomp, M.; Rosso, C.; van Beusekom, S.A.M.; Emmerich, B.; Stal, L.; Huisman, J. (2013). 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