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We examined the collection of surface mucous as a less invasive alternative method for sourcing genomic DNA by comparing it to autologous muscle tissue samples from Atlantic blue marlin (<i>Makaira nigricans</i>), white marlin (<i>Tetraptu. rus albidus</i>), sailfish (<i>Istiophorus platypterus</i>), and swordfish (<i>Xiphias gladius</i>). Purified DNA from mucous was comparable to muscle and was suitable for conventional polymerase chain reaction, random amplified polymorphic DNA analysis, and mitochondrial and nuclear locus sequencing. 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