{"refrec":{"BRefID":142446,"RR":"<b>Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Ruddick, K.G.; Van Houdt, J.K.J.; Volckaert, F.A.M.</b> (2009). To see in different seas: spatial variation in the rhodopsin gene of the sand goby (<i>Pomatoschistus minutus</i>), <b><i>in</i></b>: Larmuseau, M.H.D. <i>Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels.</i> pp. 115-141","BEntID":307018,"PublicFlag":1,"CheckedFlag":0,"wosflag":0,"vabbflag":0,"RefStringPartII":", <b><i>in</i></b>: Larmuseau, M.H.D. <i>Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels.</i> pp. 115-141","DocTypID":17,"DocType":"Book chapters","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Ruddick, K.G.; Van Houdt, J.K.J.; Volckaert, F.A.M.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Larmuseau, M.H.D. <i>et al.</i>","Englishabstract":"Aquatic organisms living in a range of photic environments require specific mechanisms to tune their visual pigments. Maximum absorbance (?<sub>max</sub>) of retinal rods in populations of the marine demersal sand goby, (<i>Pomatoschistus minutus</i>; Gobiidae, Teleostei) correlates with the local optic environment. It has been shown that this is not regulated through a physiological response by exchanging the rhodopsin chromophore. To test for evolutionary adaptation, the sequence of the rhodopsin (<i>RH1</i>) gene was analysed in 165 <i>Pomatoschistus minutus</i> individuals from seven populations across its distribution range. Analysis showed a high level of intraspecific polymorphism at the <i>RH1</i> gene, including nonsynonymous mutations on amino acids, known as spectral tuning sites. Population differentiation at these sites was in agreement with the observed differentiation in ?<sub>max</sub> values. Analyses of <i>d</i><sub>N</sub>/<i>d</i><sub>S</sub> substitution rate ratios and likelihood ratio tests under site-specific models detected a significant signal of positive Darwinian selection on the <i>RH1</i> gene. A strong discrepancy in differentiation was noticed between <i>RH1</i> gene variation and the presumably neutral microsatellites and mitochondrial data. Samples did not cluster according to geographical or historical proximity with regards to <i>RH1</i>, but according to the general photic conditions of the habitat environment of the sand goby. This study highlights the usefulness of sensory genes, like rhodopsin, for studying the characteristics of local adaptation in marine nonmodel organisms.","AbstractOtherLang":null,"BibLvlCode":"AM","StandardTitle":"To see in different seas: spatial variation in the rhodopsin gene of the sand goby (<i>Pomatoschistus minutus</i>)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2025-07-02 08:58:19.190595","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"adaptive evolution; candidate gene; Gobiidae; marine fish;photoreceptor; remote sensing; vision","OtherDescriptors":null,"Notes":null,"AnaPub":2009,"MonPub":null,"DateUpdate":"2019-08-29","DateCreate":"2009-12-08","SecASFANote":null,"ConfID":null,"PeerRev":0,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":0},"refs":null,"anarec":{"AnaID":142446,"PubliDate":2009,"Pagination":"115-141","XtraPublOfAnaID":null,"ISBN":"978-90-8649-272-5","Volume":null,"Issue":null,"BRefMon":142437,"BRefMonRR":"<B>Larmuseau, M.H.D.</B> (2009). Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels. PhD Thesis. Katholieke Universiteit Leuven. Faculteit Wetenschappen: Leuven. ISBN 978-90-8649-272-5. 258 pp.","BRefXtra":null,"BRefXtraRR":null,"SerBRefID":null,"SerRR":null,"StandardTitleSer":null,"ISSN":null,"AbbrevSer":null,"StandardTitleMon":"Sea (in)sight: from phylogeographical insights to visual local adaptation in marine gobies = (In)zicht op zee: van fylogeografische inzichten naar visuele lokale adaptatie bij mariene grondels","StartPage":115,"Pages":27,"ToPubliDate":null,"BRefBibLvlCode":"M","SerNotes":null,"AutString":"Larmuseau, M.H.D."},"monrec":null,"serrec":null,"relations":[{"YBRefID":142448,"RefStrFull":"<b>Larmuseau, M.H.D.; Raeymaekers, J.A.M.; Ruddick, K.G.; Van Houdt, J.K.J.; Volckaert, F.A.M.</b> (2009). To see in different seas: spatial variation in the rhodopsin gene of the sand goby (<i>Pomatoschistus minutus</i>). <i>Mol. Ecol. 18(20)</i>: 4227-4239. <a href=\"http://dx.doi.org/10.1111/j.1365-294X.2009.04331.x\" target=\"_blank\">dx.doi.org/10.1111/j.1365-294X.2009.04331.x</a>","RelID":4,"Relation":"Related to","StandardTitle":"To see in different seas: spatial variation in the rhodopsin gene of the sand goby (<i>Pomatoschistus minutus</i>)"}],"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Larmuseau","Firstname":"Maarten","Initials":"M.H.D.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven (K.U. Leuven)","Discriminator":null,"CorporateFlag":0,"BEntID":307018,"AutID":155508,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":null,"PersID":10113,"InsID":8835},{"AutName":"Raeymaekers","Firstname":"Joost","Initials":"J.A.M.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven (K.U. Leuven)","Discriminator":null,"CorporateFlag":0,"BEntID":307018,"AutID":155509,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":"0000-0003-2732-7495","PersID":3439,"InsID":8835},{"AutName":"Ruddick","Firstname":"Kevin","Initials":"K.G.","Affiliation":"Management Unit of the North Sea Mathematical Models (MUMM), Royal Belgian Institute for Natural Sciences (RBINS)","Discriminator":null,"CorporateFlag":0,"BEntID":307018,"AutID":144652,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"BMM","InsFSN":"Koninklijk Belgisch Instituut voor Natuurwetenschappen; Operationele Directie Natuurlijk Milieu; Beheerseenheid Mathematisch Model Noordzee en Schelde-estuarium","ORCID":null,"PersID":2785,"InsID":4691},{"AutName":"Van Houdt","Firstname":"Jeroen","Initials":"J.K.J.","Affiliation":"Royal Museum for Central Africa","Discriminator":null,"CorporateFlag":0,"BEntID":307018,"AutID":155398,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"KMMA","InsFSN":"Koninklijk Museum voor Midden Afrika","ORCID":null,"PersID":2671,"InsID":1489},{"AutName":"Volckaert","Firstname":"Filip","Initials":"F.A.M.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven (K.U. Leuven)","Discriminator":null,"CorporateFlag":0,"BEntID":307018,"AutID":155510,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":"0000-0003-4342-4295","PersID":13,"InsID":8835}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":155180,"LibID":36,"BRefID":142446,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":0,"hasOCRd":null,"ShelfLocCode":null,"RFID":null,"PaidValue":null,"Medium":"Paper","Description":null,"Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":null,"URL":null,"ClassifID":null,"Classification":null,"ReqLink":null,"ClassifTypID":null,"URLLocation":null,"SubDir":null,"InternalReq":null,"LoggedInReq":null,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":null,"FileDescr":null,"InsPub":1,"InsID":36,"FileFormID":null,"LendableFlag":0,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":null,"MONpubls":[{"PublName":"Katholieke Universiteit Leuven. Faculteit Wetenschappen","Place":"Leuven"}],"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Photoreceptors","ThestID":6171,"Acronym":"ASFA","ThesTermPath":"Anatomical structures > Body organs > Animal organs > Sense organs > Photoreceptors"},{"ThesaurusTerm":"ANE, North Sea","ThestID":182108,"Acronym":"ASFA_GEOT","ThesTermPath":"ANE, North Sea"},{"ThesaurusTerm":"Marine fish","ThestID":5000,"Acronym":"ASFA","ThesTermPath":"Aquatic organisms > Marine organisms > Fish > Marine fish"},{"ThesaurusTerm":"Visual pigments","ThestID":9009,"Acronym":"ASFA","ThesTermPath":"Chemical compounds > Organic compounds > Carbohydrates > Glycosides > Pigments > Visual pigments"},{"ThesaurusTerm":"Europe Coasts","ThestID":183723,"Acronym":"ASFA_GEOT","ThesTermPath":"Europe Coasts"},{"ThesaurusTerm":"Remote sensing","ThestID":6864,"Acronym":"ASFA","ThesTermPath":"Remote sensing"},{"ThesaurusTerm":"Spatial variations","ThestID":7855,"Acronym":"ASFA","ThesTermPath":"Spatial variations"}],"thestermsASFA":[{"ThesaurusTerm":"ANE, North Sea"},{"ThesaurusTerm":"Europe Coasts"},{"ThesaurusTerm":"Marine fish"},{"ThesaurusTerm":"Photoreceptors"},{"ThesaurusTerm":"Remote sensing"},{"ThesaurusTerm":"Spatial variations"},{"ThesaurusTerm":"Visual pigments"}],"taxtermsASFA":[{"TaxTerm":"Gobiidae"},{"TaxTerm":"Pomatoschistus minutus (Pallas, 1770)"}],"geotermsASFA":[{"GeoTerm":"North Sea"}],"collections":null,"conf":null,"proj":[{"ProID":2051,"Acronym":"WESTBANKS","ProStandardTitle":"Understanding benthic, pelagic and air-borne ecosystem interactions in shallow coastal seas","BYear":2006,"BMonth":12,"EYear":2011,"EMonth":1,"FP7Code":null,"RelID":null,"Relation":null,"DutchTerm":null}],"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"367":{"SpName":"WestBanks","SpColID":367,"ParSpColID":null,"TopParID":null,"ShortName":"westbanks","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"westbanks"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":[{"AutName":"Larmuseau","Initials":"M.H.D.","CorporateFlag":0,"BEntID":135643,"AutID":80261,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"AutStrTrunc":"Larmuseau, M.H.D."}],"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":307018,"AbstractFlag":-1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":307018,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":null,"thesterms":[{"ThesaurusTerm":"ANE, North Sea","ThestID":182108,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Europe Coasts","ThestID":183723,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Marine fish","ThestID":5000,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Photoreceptors","ThestID":6171,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Remote sensing","ThestID":6864,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Spatial variations","ThestID":7855,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Visual pigments","ThestID":9009,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxterms":[{"TaxTerm":"Gobiidae [Gobies]","AphiaID":125537,"TaxtID":21443},{"TaxTerm":"Pomatoschistus minutus (Pallas, 1770) [Sand goby]","AphiaID":126928,"TaxtID":16567}],"geoterms":[{"GeoTerm":"North Sea","GeoObjectID":2350,"GeotID":390}],"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"ANE, North Sea","DutchTerm":null,"ThestID":182108,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Europe Coasts","DutchTerm":null,"ThestID":183723,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Marine fish","DutchTerm":"Mariene vis","ThestID":5000,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Photoreceptors","DutchTerm":null,"ThestID":6171,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Remote sensing","DutchTerm":"Teledetectie","ThestID":6864,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Spatial variations","DutchTerm":"Ruimtelijk variaties","ThestID":7855,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Visual pigments","DutchTerm":null,"ThestID":9009,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxtermsFRIS":[{"TaxTerm":"Gobiidae","DutchTerm":"Grondels","AphiaID":125537,"TaxtID":21443},{"TaxTerm":"Pomatoschistus minutus (Pallas, 1770)","DutchTerm":"Dikkopje","AphiaID":126928,"TaxtID":16567}],"geotermsFRIS":[{"GeoTerm":"North Sea","DutchTerm":"Noordzee"}],"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2009-12-08 08:50:44.177000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2019-08-29 08:10:51.453000","timezone_type":3,"timezone":"Europe/Brussels"}}}