{"refrec":{"BRefID":143343,"RR":"<b>Larmuseau, M.H.D.; Huyse, T.; Vancampenhout, K.; Van Houdt, J.K.J.; Volckaert, F.A.M.</b> (2010). High molecular diversity in the rhodopsin gene in closely related goby fishes: a role for visual pigments in adaptive speciation? <i>Mol. Phylogenet. Evol. 55(2)</i>: 689-698. <a href=\"http://dx.doi.org/10.1016/j.ympev.2009.10.007\" target=\"_blank\">dx.doi.org/10.1016/j.ympev.2009.10.007</a>","BEntID":136529,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":" <i>Mol. Phylogenet. Evol. 55(2)</i>: 689-698. <a href=\"https://dx.doi.org/10.1016/j.ympev.2009.10.007\" target=\"_blank\">https://dx.doi.org/10.1016/j.ympev.2009.10.007</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Larmuseau, M.H.D.; Huyse, T.; Vancampenhout, K.; Van Houdt, J.K.J.; Volckaert, F.A.M.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Larmuseau, M.H.D. <i>et al.</i>","Englishabstract":"The spectral tuning mechanism of visual pigments is an excellent model to elucidate the mechanisms of adaptive evolution and the importance of selection as an evolutionary force. Therefore, we use a phylogenetic approach to determine whether there is evidence for differential adaptive molecular evolution on the rhodopsin (<i>RH1</i>) gene among closely related ‘sand goby’ species (Teleostei, Gobiidae). Fragments of the <i>RH1</i> gene (868 bp) were sequenced and analyzed for nine ‘sand goby’ species that inhabit different photic environments. A high level of interspecific polymorphism at the <i>RH1</i> gene was observed, including non-synonymous mutations on amino acids known as spectral tuning sites. Clear indications for positive Darwinian selection were provided by three independent methods: (1) by linking functional variation on the <i>RH1</i> gene to specific light environments of the different fish habitats; (2) by constructing and comparing phylogenies based on <i>RH1</i> and the ‘neutral’ 12S and 16S mtDNA fragments; and (3) by performing statistical tests to detect signatures of directional selection on the <i>RH1</i> gene. This study shows an unusual high variability in the gobiid visual RH1 pigment, and we therefore suggest a possible role for sensory genes in the adaptive radiation of ‘sand goby’ species.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"High molecular diversity in the rhodopsin gene in closely related goby fishes: a role for visual pigments in adaptive speciation?","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Molecular adaptation; Gobiidae; Opsin genes; Phylogeny; Photicenvironment; Rhodopsin; 'Sand goby' group","OtherDescriptors":null,"Notes":null,"AnaPub":2010,"MonPub":null,"DateUpdate":"2014-11-06","DateCreate":"2010-01-26","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000276875300029","VABBcode":null,"OpenAcc":0,"DOI":"10.1016/j.ympev.2009.10.007"},"refs":null,"anarec":{"AnaID":143343,"PubliDate":2010,"Pagination":"689-698","XtraPublOfAnaID":null,"ISBN":null,"Volume":"55","Issue":"2","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":45071,"SerRR":"Molecular Phylogenetics and Evolution. Elsevier: Orlando, FL.  ISSN 1055-7903; e-ISSN 1095-9513","StandardTitleSer":"Molecular Phylogenetics and Evolution","ISSN":"1055-7903","AbbrevSer":"Mol. Phylogenet. Evol.","StandardTitleMon":null,"StartPage":689,"Pages":10,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Larmuseau","Firstname":"Maarten","Initials":"M.H.D.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven","Discriminator":null,"CorporateFlag":0,"BEntID":136529,"AutID":145801,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":null,"PersID":10113,"InsID":8835},{"AutName":"Huyse","Firstname":"Tine","Initials":"T.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven","Discriminator":null,"CorporateFlag":0,"BEntID":136529,"AutID":155379,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":null,"PersID":2666,"InsID":8835},{"AutName":"Vancampenhout","Firstname":"Kim","Initials":"K.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven","Discriminator":null,"CorporateFlag":0,"BEntID":136529,"AutID":155470,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":null,"PersID":27284,"InsID":8835},{"AutName":"Van Houdt","Firstname":"Jeroen","Initials":"J.K.J.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven","Discriminator":null,"CorporateFlag":0,"BEntID":136529,"AutID":155397,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":null,"PersID":2671,"InsID":8835},{"AutName":"Volckaert","Firstname":"Filip","Initials":"F.A.M.","Affiliation":"Laboratory of Animal Diversity and Systematics, Katholieke Universiteit Leuven","Discriminator":null,"CorporateFlag":0,"BEntID":136529,"AutID":141840,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Katholieke Universiteit Leuven; Departement Biologie; Afdeling Dierenecologie en -systematiek; Diversiteit en Systematiek van Dieren","ORCID":"0000-0003-4342-4295","PersID":13,"InsID":8835}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":218219,"LibID":36,"BRefID":143343,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"218219","RFID":null,"PaidValue":null,"Medium":"Server","Description":null,"Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open Marien Archief","URL":null,"ClassifID":235,"Classification":"Open Marine Archive","ReqLink":null,"ClassifTypID":5,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":0,"InternalReq":0,"LoggedInReq":0,"Disclaimer":"Disclaimer_OMA","DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Elsevier","City":"Orlando, FL"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Phylogeny","ThestID":6184,"Acronym":"ASFA","ThesTermPath":"Biogeny > Phylogeny"},{"ThesaurusTerm":"Genes","ThestID":3589,"Acronym":"ASFA","ThesTermPath":"Cell constituents > Chromosomes > Genes"},{"ThesaurusTerm":"Visual pigments","ThestID":9009,"Acronym":"ASFA","ThesTermPath":"Chemical compounds > Organic compounds > Carbohydrates > Glycosides > Pigments > Visual pigments"},{"ThesaurusTerm":"Epipelagic zone","ThestID":2841,"Acronym":"ASFA","ThesTermPath":"Environments > Aquatic environment > Pelagic environment > Oceanic province > Epipelagic zone"},{"ThesaurusTerm":"Photic environment","ThestID":6149,"Acronym":"ASFA","ThesTermPath":"Photic environment"},{"ThesaurusTerm":"Rhodopsin","ThestID":6967,"Acronym":"ASFA","ThesTermPath":"Rhodopsin"}],"thestermsASFA":[{"ThesaurusTerm":"Epipelagic zone"},{"ThesaurusTerm":"Genes"},{"ThesaurusTerm":"Phylogeny"},{"ThesaurusTerm":"Visual pigments"}],"taxtermsASFA":[{"TaxTerm":"Gobiidae"}],"geotermsASFA":null,"collections":[{"Collection":"OMA - Open Marien Archief","ShortName":"OMA"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"221":{"SpName":"OMA - Open Marien Archief","SpColID":221,"ParSpColID":null,"TopParID":null,"ShortName":"OMA","URLLocation":null,"LibID":36,"OpenRepoFlag":1,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OMA"},"367":{"SpName":"WestBanks","SpColID":367,"ParSpColID":null,"TopParID":null,"ShortName":"westbanks","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"westbanks"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":136529,"AbstractFlag":-1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":136529,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1016/j.ympev.2009.10.007","externalID":"10.1016/j.ympev.2009.10.007","URLTypeCode":"DOI","URLID":17871,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Epipelagic zone","ThestID":2841,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Genes","ThestID":3589,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Photic environment","ThestID":6149,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Phylogeny","ThestID":6184,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Rhodopsin","ThestID":6967,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Visual pigments","ThestID":9009,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxterms":[{"TaxTerm":"Gobiidae [Gobies]","AphiaID":125537,"TaxtID":21443}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Epipelagic zone","DutchTerm":null,"ThestID":2841,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Genes","DutchTerm":"Genen","ThestID":3589,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Photic environment","DutchTerm":null,"ThestID":6149,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Phylogeny","DutchTerm":"Fylogenie","ThestID":6184,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Rhodopsin","DutchTerm":null,"ThestID":6967,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Visual pigments","DutchTerm":null,"ThestID":9009,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxtermsFRIS":[{"TaxTerm":"Gobiidae","DutchTerm":"Grondels","AphiaID":125537,"TaxtID":21443}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Dewitte, Elien, E.","newSesDate":{"date":"2010-01-26 13:51:22.680000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2014-11-06 08:29:56.877000","timezone_type":3,"timezone":"Europe/Brussels"}}}