{"refrec":{"BRefID":207175,"RR":"<b>Gilbert, J.A.; Dupont, C.L.</b> (2011). Microbial metagenomics: beyond the genome, <b><i>in</i></b>: Carlson, C.A. <i>et al.</i> <i>Ann. Rev. Mar. Sci. 3. Annual Review of Marine Science,</i> 3: pp. 347-371. <a href=\"https://dx.doi.org/10.1146/annurev-marine-120709-142811\" target=\"_blank\">https://dx.doi.org/10.1146/annurev-marine-120709-142811</a>","BEntID":199234,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":0,"RefStringPartII":", <b><i>in</i></b>: Carlson, C.A. <i>et al.</i> <i>Ann. Rev. Mar. Sci. 3. Annual Review of Marine Science,</i> 3: pp. 347-371. <a href=\"https://dx.doi.org/10.1146/annurev-marine-120709-142811\" target=\"_blank\">https://dx.doi.org/10.1146/annurev-marine-120709-142811</a>","DocTypID":17,"DocType":"Book chapters","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Gilbert, J.A.; Dupont, C.L.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Gilbert, J.A.; Dupont, C.L.","Englishabstract":"Metagenomics literally means “beyond the genome.” Marine microbial metagenomic databases presently comprise 400 billion base pairs of DNA, only 3% of that found in 1 ml of seawater. Very soon a trillion-base-pair sequence run will be feasible, so it is time to reflect on what we have learned from metagenomics. We review the impact of metagenomics on our understanding of marine microbial communities. We consider the studies facilitated by data generated through the Global Ocean Sampling expedition, as well as the revolution wrought at the individual laboratory level through next generation sequencing technologies. We review recent studies and discoveries since 2008, provide a discussion of bioinformatic analyses, including conceptual pipelines and sequence annotation and predict the future of metagenomics, with suggestions of collaborative community studies tailored toward answering some of the fundamental questions in marine microbial ecology.","AbstractOtherLang":null,"BibLvlCode":"AMS","StandardTitle":"Microbial metagenomics: beyond the genome","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"bacteria; communities; bioinformatics; annotation; next generation sequencing; function","OtherDescriptors":null,"Notes":null,"AnaPub":2011,"MonPub":null,"DateUpdate":"2022-03-23","DateCreate":"2011-08-25","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000286638700013","VABBcode":null,"OpenAcc":0,"DOI":"10.1146/annurev-marine-120709-142811"},"refs":null,"anarec":{"AnaID":207175,"PubliDate":2011,"Pagination":"347-371","XtraPublOfAnaID":null,"ISBN":"978-0-8243-4503-7","Volume":"3","Issue":null,"BRefMon":350592,"BRefMonRR":"<b>Carlson, C.A.; Giovannoni, S.J.</b> (2011). Ann. Rev. Mar. Sci. 3. <i>Annual Review of Marine Science</i>, 3. Annual Reviews: Palo Alto. ISBN 978-0-8243-4503-7. 599 pp.","BRefXtra":null,"BRefXtraRR":null,"SerBRefID":131204,"SerRR":"Annual Review of Marine Science. Annual Reviews: Palo Alto, Calif.  ISSN 1941-1405; e-ISSN 1941-0611","StandardTitleSer":"Annual Review of Marine Science","ISSN":"1941-1405","AbbrevSer":"Ann. Rev. Mar. Sci.","StandardTitleMon":"Ann. Rev. Mar. Sci. 3","StartPage":347,"Pages":25,"ToPubliDate":null,"BRefBibLvlCode":"MS","SerNotes":null,"AutString":"Carlson, C.A.; Giovannoni, S.J."},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Gilbert","Firstname":"Jack","Initials":"J.A.","Affiliation":"Plymouth Marine Lab, Plymouth PL1 3DH, Devon, England.","Discriminator":null,"CorporateFlag":0,"BEntID":199234,"AutID":313526,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Dupont","Firstname":"Christopher","Initials":"C.L.","Affiliation":"J Craig Venter Inst, San Diego, CA 92121 USA.","Discriminator":null,"CorporateFlag":0,"BEntID":199234,"AutID":313527,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":225276,"LibID":36,"BRefID":207175,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"225276","RFID":null,"PaidValue":null,"Medium":"Server","Description":"Interne VLIZ documenten","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Non-open access","URL":null,"ClassifID":228,"Classification":"Non-open access","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":1,"Disclaimer":"Disclaimer_VLIZ_Intern","DutchDisclaimer":"<p>Deze publicatie is enkel beschikbaar voor persoonlijk gebruik binnen de Innovocean site <br />en mag op geen enkele manier verder worden verspreid.</p>","FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":null,"MONpubls":[{"PublName":"Annual Reviews","Place":"Palo Alto"}],"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":[{"TaxTerm":"Bacteria"}],"geotermsASFA":null,"collections":null,"conf":null,"proj":null,"Physdatasets":null,"spcols":null,"doi":null,"publs":null,"serparttypes":null,"monauthors":[{"AutName":"Carlson","Initials":"C.A.","CorporateFlag":0,"BEntID":348288,"AutID":158080,"OrderNr":1,"DegrID":null,"EditorFlag":1,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"AutStrTrunc":"Carlson, C.A.; Giovannoni, S.J."},{"AutName":"Giovannoni","Initials":"S.J.","CorporateFlag":0,"BEntID":348288,"AutID":29232,"OrderNr":2,"DegrID":null,"EditorFlag":1,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"AutStrTrunc":"Carlson, C.A.; Giovannoni, S.J."}],"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":199234,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":199234,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1146/annurev-marine-120709-142811","externalID":"10.1146/annurev-marine-120709-142811","URLTypeCode":"DOI","URLID":18913,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":[{"TaxTerm":"Bacteria","AphiaID":6,"TaxtID":11315}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":[{"TaxTerm":"Bacteria","DutchTerm":null,"AphiaID":6,"TaxtID":11315}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Haspeslagh, Jan, J.","newSesDate":{"date":"2011-08-25 14:16:44.000000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2022-03-23 09:14:21.743000","timezone_type":3,"timezone":"Europe/Brussels"}}}