{"refrec":{"BRefID":211567,"RR":"<b>Grünke, S.; Felden, J.; Lichtschlag, A.; Girnth, A.-C.; de Beer, D.; Wenzhöfer, F.; Boetius, A.</b> (2011). Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea). <i>Geobiol. 9(4)</i>: 330-348. <a href=\"http://dx.doi.org/10.1111/j.1472-4669.2011.00281.x\" target=\"_blank\">dx.doi.org/10.1111/j.1472-4669.2011.00281.x</a>","BEntID":203488,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":null,"RefStringPartII":". <i>Geobiol. 9(4)</i>: 330-348. <a href=\"https://dx.doi.org/10.1111/j.1472-4669.2011.00281.x\" target=\"_blank\">https://dx.doi.org/10.1111/j.1472-4669.2011.00281.x</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Grünke, S.; Felden, J.; Lichtschlag, A.; Girnth, A.-C.; de Beer, D.; Wenzhöfer, F.; Boetius, A.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Grünke, S. <i>et al.</i>","Englishabstract":"Sufidic muds of cold seeps on the Nile Deep Sea Fan (NDSF) are populated by different types of mat-forming sulfide-oxidizing bacteria. The predominant sulfide oxidizers of three different mats were identified by microscopic and phylogenetic analyses as (i) <em>Arcobacter</em> species producing cotton-ball-like sulfur precipitates, (ii) large filamentous sulfur bacteria including <em>Beggiatoa</em> species, and (iii) single, spherical <em>Thiomargarita</em> species. High resolution <em>in situ</em> microprofiles revealed different geochemical settings selecting for the different mat types. <em>Arcobacter</em> mats occurred where oxygen and sulfide overlapped above the seafloor in the bottom water interface. Filamentous sulfide oxidizers were associated with steep gradients of oxygen and sulfide in the sediment. A dense population of <em>Thiomargarita</em> was favored by temporarily changing supplies of oxygen and sulfide in the bottom water. These results indicate that the decisive factors in selecting for different mat-forming bacteria within one deep-sea province are spatial or temporal variations in energy supply. Furthermore, the occurrence of <em>Arcobacter</em> spp.-related 16S rRNA genes in the sediments below all three types of mats, as well as on top of brine lakes of the NDSF, indicates that this group of sulfide oxidizers can switch between different life modes depending on the geobiochemical habitat setting.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Niche differentiation among mat-forming, sulfide-oxidizing bacteria at cold seeps of the Nile Deep Sea Fan (Eastern Mediterranean Sea)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2025-07-02 08:33:14.980000","timezone_type":1,"timezone":"+00:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2011,"MonPub":null,"DateUpdate":"2018-02-13","DateCreate":"2012-01-04","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000294172700004","VABBcode":null,"OpenAcc":0,"DOI":"10.1111/j.1472-4669.2011.00281.x"},"refs":null,"anarec":{"AnaID":211567,"PubliDate":2011,"Pagination":"330-348","XtraPublOfAnaID":null,"ISBN":null,"Volume":"9","Issue":"4","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":209856,"SerRR":"Geobiology. Blackwell: Oxford.  ISSN 1472-4677; e-ISSN 1472-4669","StandardTitleSer":"Geobiology","ISSN":"1472-4677","AbbrevSer":"Geobiol.","StandardTitleMon":null,"StartPage":330,"Pages":19,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Grünke","Firstname":"Stefanie","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":1,"BEntID":203488,"AutID":137791,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Felden","Firstname":null,"Initials":"J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":203488,"AutID":141382,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Lichtschlag","Firstname":"Anna","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":1,"BEntID":203488,"AutID":137792,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Girnth","Firstname":null,"Initials":"A.-C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":203488,"AutID":141385,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"de Beer","Firstname":"Dirk","Initials":"D.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":203488,"AutID":13345,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Wenzhöfer","Firstname":"Frank","Initials":"F.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":203488,"AutID":34374,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Boetius","Firstname":"Antje","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":203488,"AutID":29163,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":[{"DasID":2899,"Acronym":null,"Citation":"Grünke, S. & Boetius, A. (2009). Bacteria of the Eastern Mediterranean (2006) and the Nordic Margin (2006-2009) collected during different cruises and processed by MPIMM. Max Planck Institute for Marine Microbiology (MPIMM), Germany.","StandardTitle":"Bacteria of the Eastern Mediterranean (2006) and the Nordic Margin (2006-2009) collected during different cruises and processed by MPIMM","RelationID":2,"DOI":null}],"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":229935,"LibID":36,"BRefID":211567,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"229935","RFID":null,"PaidValue":null,"Medium":"Server","Description":"Interne VLIZ documenten","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Non-open access","URL":null,"ClassifID":228,"Classification":"Non-open access","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":1,"Disclaimer":"Disclaimer_VLIZ_Intern","DutchDisclaimer":"<p>Deze publicatie is enkel beschikbaar voor persoonlijk gebruik binnen de Innovocean site <br />en mag op geen enkele manier verder worden verspreid.</p>","FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Blackwell","City":"Oxford"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Sulphur oxides","ThestID":8189,"Acronym":"ASFA","ThesTermPath":"Chemical compounds > Sulphur compounds > Oxides > Sulphur oxides"},{"ThesaurusTerm":"Oxidation","ThestID":5919,"Acronym":"ASFA","ThesTermPath":"Chemical reactions > Oxidation"},{"ThesaurusTerm":"Mats","ThestID":65875,"Acronym":"CSA","ThesTermPath":"Mats"},{"ThesaurusTerm":"MED, Eastern Mediterranean","ThestID":185854,"Acronym":"ASFA_GEOT","ThesTermPath":"MED, Eastern Mediterranean"},{"ThesaurusTerm":"Bacteria","ThestID":710,"Acronym":"ASFA","ThesTermPath":"Microorganisms > Bacteria"},{"ThesaurusTerm":"Niches","ThestID":5551,"Acronym":"ASFA","ThesTermPath":"Niches"},{"ThesaurusTerm":"Sediments","ThestID":7403,"Acronym":"ASFA","ThesTermPath":"Sediments"},{"ThesaurusTerm":"Seeps","ThestID":7411,"Acronym":"ASFA","ThesTermPath":"Seeps"}],"thestermsASFA":[{"ThesaurusTerm":"Bacteria"},{"ThesaurusTerm":"Mats"},{"ThesaurusTerm":"MED, Eastern Mediterranean"},{"ThesaurusTerm":"Niches"},{"ThesaurusTerm":"Oxidation"},{"ThesaurusTerm":"Sediments"},{"ThesaurusTerm":"Sulphur oxides"}],"taxtermsASFA":null,"geotermsASFA":[{"GeoTerm":"Mediterranean Sea - Eastern Basin"}],"collections":null,"conf":null,"proj":null,"Physdatasets":null,"spcols":null,"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":203488,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1111/j.1472-4669.2011.00281.x","externalID":"10.1111/j.1472-4669.2011.00281.x","URLTypeCode":"DOI","URLID":20431,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Bacteria","ThestID":710,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Mats","ThestID":65875,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"MED, Eastern Mediterranean","ThestID":185854,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Niches","ThestID":5551,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Oxidation","ThestID":5919,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Sediments","ThestID":7403,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Seeps","ThestID":7411,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Sulphur oxides","ThestID":8189,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxterms":null,"geoterms":[{"GeoTerm":"Mediterranean Sea - Eastern Basin","GeoObjectID":4280,"GeotID":4141}],"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Bacteria","DutchTerm":"Bacteriën","ThestID":710,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Mats","DutchTerm":null,"ThestID":65875,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"MED, Eastern Mediterranean","DutchTerm":null,"ThestID":185854,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"},{"ThesaurusTerm":"Niches","DutchTerm":"Niches","ThestID":5551,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Oxidation","DutchTerm":"Oxidatie","ThestID":5919,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Sediments","DutchTerm":"Sedimenten","ThestID":7403,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Seeps","DutchTerm":"Plassen","ThestID":7411,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Sulphur oxides","DutchTerm":null,"ThestID":8189,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxtermsFRIS":null,"geotermsFRIS":[{"GeoTerm":"Mediterranean Sea - Eastern Basin","DutchTerm":null}],"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2012-01-04 11:10:04.673000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Lyssens, Liesbeth, L.","updSesDate":{"date":"2018-02-13 19:34:46.407000","timezone_type":3,"timezone":"Europe/Brussels"}}}