{"refrec":{"BRefID":246538,"RR":"<b>ten Hoopen, A.; Pesant, S.; Kottmann, R.; Kopf, A.; Bicak, M.; Claus, S.; Deneudt, K.; Borremans, C.; Thijssen, P.; Dekeyzer, S.; Schaap, D.M.A.; Bowler, C.; Glóckner, F.O.; Cochrane, G.</b> (2015). Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. <i>Stand Genomic Sci. 10</i>: 20 [1-10]. <a href=\"https://dx.doi.org/10.1186/s40793-015-0001-5\" target=\"_blank\">https://dx.doi.org/10.1186/s40793-015-0001-5</a>","BEntID":238237,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Stand Genomic Sci. 10</i>: 20 [1-10]. <a href=\"https://dx.doi.org/10.1186/s40793-015-0001-5\" target=\"_blank\">https://dx.doi.org/10.1186/s40793-015-0001-5</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"ten Hoopen, A.; Pesant, S.; Kottmann, R.; Kopf, A.; Bicak, M.; Claus, S.; Deneudt, K.; Borremans, C.; Thijssen, P.; Dekeyzer, S.; Schaap, D.M.A.; Bowler, C.; Glóckner, F.O.; Cochrane, G.","OrigTitleTranslFlag":0,"Authorstringtrunc":"ten Hoopen, A. <i>et al.</i>","Englishabstract":"Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for “Reporting” and “Serving” data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be discovered and explored in data repositories. The M2B3 Standards were developed by the European project Micro B3, funded under 7th Framework Programme “Ocean of Tomorrow”, and were first used with the Ocean Sampling Day initiative. We believe that these standards have value in broader marine science.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-06-04 01:31:12.728055","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Data standard; Molecular; Microbial","OtherDescriptors":null,"Notes":null,"AnaPub":2015,"MonPub":null,"DateUpdate":"2022-03-10","DateCreate":"2015-05-08","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000367986300001","VABBcode":null,"OpenAcc":1,"DOI":"10.1186/s40793-015-0001-5"},"refs":null,"anarec":{"AnaID":246538,"PubliDate":2015,"Pagination":"20 [1-10]","XtraPublOfAnaID":null,"ISBN":null,"Volume":"10","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":246536,"SerRR":"Standards in Genomic Sciences. BioMed Central: London.  e-ISSN 1944-3277","StandardTitleSer":"Standards in Genomic Sciences","ISSN":null,"AbbrevSer":"Stand Genomic Sci.","StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"ten Hoopen","Firstname":"Aart","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":48994,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Pesant","Firstname":"Stéphane","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":126486,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":"0000-0002-4936-5209","PersID":20767,"InsID":null},{"AutName":"Kottmann","Firstname":"Renzo","Initials":"R.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":159380,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":27820,"InsID":null},{"AutName":"Kopf","Firstname":"Anna","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":193895,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Bicak","Firstname":"Mesude","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":193896,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Claus","Firstname":"Simon","Initials":"S.","Affiliation":"Vlaams Instituut voor de Zee","Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":164152,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"VLIZ","InsFSN":"Vlaams Instituut voor de Zee","ORCID":null,"PersID":8091,"InsID":36},{"AutName":"Deneudt","Firstname":"Klaas","Initials":"K.","Affiliation":"Vlaams Instituut voor de Zee","Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":164112,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"VLIZ","InsFSN":"Vlaams Instituut voor de Zee","ORCID":"0000-0002-8559-3508","PersID":3362,"InsID":36},{"AutName":"Borremans","Firstname":"Catherine","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":1,"BEntID":238237,"AutID":126504,"OrderNr":8,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Thijssen","Firstname":"Peter","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":89877,"OrderNr":9,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Dekeyzer","Firstname":"Stefanie","Initials":"S.","Affiliation":"Vlaams Instituut voor de Zee","Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":193897,"OrderNr":10,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"VLIZ","InsFSN":"Vlaams Instituut voor de Zee","ORCID":"0000-0001-9525-2742","PersID":26101,"InsID":36},{"AutName":"Schaap","Firstname":"Dick","Initials":"D.M.A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":32267,"OrderNr":11,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":5124,"InsID":null},{"AutName":"Bowler","Firstname":"Chris","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":49169,"OrderNr":12,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Glóckner","Firstname":"Frank Oliver","Initials":"F.O.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":83049,"OrderNr":13,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":27010,"InsID":null},{"AutName":"Cochrane","Firstname":"Guy","Initials":"G.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":238237,"AutID":84064,"OrderNr":14,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":[{"DasID":8044,"Acronym":"OSD2014","Citation":"Participants of Ocean Sampling Day 2014: Registry of samples and environmental measurements from 2014. <a href=\"https://doi.pangaea.de/10.1594/PANGAEA.854419\"> https://doi.pangaea.de/10.1594/PANGAEA.854419</a>","StandardTitle":"Ocean Sampling Day 2014, registry of samples and environmental measurements from 2014","RelationID":3,"DOI":null}],"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":271229,"LibID":36,"BRefID":246538,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"271229","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"BioMed Central","City":"London"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Biodiversity","ThestID":9471,"Acronym":"ASFA","ThesTermPath":"Biodiversity"},{"ThesaurusTerm":"Bioinformatics","ThestID":61952,"Acronym":"CSA","ThesTermPath":"Bioinformatics"},{"ThesaurusTerm":"Interoperability","ThestID":68781,"Acronym":"CSA","ThesTermPath":"Interoperability"},{"ThesaurusTerm":"Reporting","ThestID":53731,"Acronym":"CSA","ThesTermPath":"Reporting"}],"thestermsASFA":[{"ThesaurusTerm":"Biodiversity"},{"ThesaurusTerm":"Bioinformatics"},{"ThesaurusTerm":"Interoperability"},{"ThesaurusTerm":"Reporting"}],"taxtermsASFA":null,"geotermsASFA":null,"collections":[{"Collection":"OMA - Open Marien Archief","ShortName":"OMA"},{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"944":{"SpName":"EUROBIS ackn - direct reference","SpColID":944,"ParSpColID":919,"TopParID":39,"ShortName":"EUROBIS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/EurOBIS ackn/EUROBIS ackn - direct"},"919":{"SpName":"European Oceanographic Biogeographic Information System (EurOBIS) acknowledged","SpColID":919,"ParSpColID":941,"TopParID":39,"ShortName":"EurOBIS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/EurOBIS ackn"},"992":{"SpName":"FRIS (VLIZ) - Flanders Research Information Space","SpColID":992,"ParSpColID":null,"TopParID":null,"ShortName":"FRIS","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"FRIS"},"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"793":{"SpName":"Marine Regions acknowledged","SpColID":793,"ParSpColID":941,"TopParID":39,"ShortName":"Marine Regions ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/Marine Regions ackn"},"221":{"SpName":"OMA - Open Marien Archief","SpColID":221,"ParSpColID":null,"TopParID":null,"ShortName":"OMA","URLLocation":null,"LibID":36,"OpenRepoFlag":1,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OMA"},"1064":{"SpName":"Peer reviewed VLIZ publications","SpColID":1064,"ParSpColID":null,"TopParID":null,"ShortName":"PR VLIZ pubs","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"PR VLIZ pubs"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":238237,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":238237,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1186/s40793-015-0001-5","externalID":"10.1186/s40793-015-0001-5","URLTypeCode":"DOI","URLID":54580,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Biodiversity","ThestID":9471,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Bioinformatics","ThestID":61952,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"Interoperability","ThestID":68781,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"Reporting","ThestID":53731,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"}],"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Biodiversity","DutchTerm":"Biodiversiteit","ThestID":9471,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Bioinformatics","DutchTerm":null,"ThestID":61952,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"Interoperability","DutchTerm":null,"ThestID":68781,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"},{"ThesaurusTerm":"Reporting","DutchTerm":null,"ThestID":53731,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"}],"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2015-05-08 08:52:47.333000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Chisala, Chilekwa, C.","updSesDate":{"date":"2022-03-10 08:50:48.693000","timezone_type":3,"timezone":"Europe/Brussels"}}}
