{"refrec":{"BRefID":246976,"RR":"<b>Figge, J; Cleenwerck, I.; van Uijen, A; De Vos, P.; Huys, G.; Robertson, L</b> (2014). <i>Photobacterium piscicola</i> sp nov., isolated from marine fish and spoiled packed cod. <i>Syst. Appl. Microbiol. 37(5)</i>: 329-335. <a href=\"https://dx.doi.org/10.1016/j.syapm.2014.05.003\" target=\"_blank\">https://dx.doi.org/10.1016/j.syapm.2014.05.003</a>","BEntID":238676,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>Syst. Appl. Microbiol. 37(5)</i>: 329-335. <a href=\"https://dx.doi.org/10.1016/j.syapm.2014.05.003\" target=\"_blank\">https://dx.doi.org/10.1016/j.syapm.2014.05.003</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Figge, J; Cleenwerck, I.; van Uijen, A; De Vos, P.; Huys, G.; Robertson, L","OrigTitleTranslFlag":0,"Authorstringtrunc":"Figge, J <i>et al.</i>","Englishabstract":"Five isolates from marine fish (W3<sup>T</sup>, WM, W1S, S2 and S3) and three isolates misclassified as <i>Photobacterium phosphoreum</i>, originating from spoiled modified atmosphere packed stored cod (NCIMB 13482 and NCIMB 13483) and the intestine of skate (NCIMB 192), were subjected to a polyphasic taxonomic study. Phylogenetic analysis of 16S rRNA gene sequences showed that the isolates were members of the genus <i>Photobacterium</i>. Sequence analysis using the <i>gapA</i>, <i>gyrB</i>, <i>pyrH</i>, <i>recA</i> and <i>rpoA</i> loci showed that these isolates formed a distinct branch in the genus <i>Photobacterium</i>, and were most closely related to <i>Photobacterium aquimaris</i>, <i>Photobacterium kishitanii</i>, <i>Photobacterium phosphoreum</i> and <i>Photobacterium iliopiscarium</i>. The <i>luxA</i> gene was present in isolates W3<sup>T</sup>, WM, W1S, S2 and S3 but not in NCIMB 13482, NCIMB 13483 and NCIMB 192. AFLP and (GTG)<sub>5</sub>-PCR fingerprinting indicated that the eight isolates represented at least five distinct genotypes. DNA–DNA hybridizations revealed 89% relatedness between isolate W3<sup>T</sup> and NCIMB 192, and values below 70% with the type strains of the phylogenetically closest species, <i>P. iliopiscarium</i> LMG 19543<sup>T</sup>, <i>P. kishitanii</i> LMG 23890<sup>T</sup>, <i>P. aquimaris</i> LMG 26951<sup>T</sup> and <i>P</i>. <i>phosphoreum</i> LMG4233<sup>T</sup>. The strains of this new taxon could also be distinguished from the latter species by phenotypic characteristics. Therefore, we propose to classify this new taxon as <i>Photobacterium piscicola</i> sp. nov., with W3<sup>T</sup> (=NCCB 100098<sup>T</sup> = LMG 27681<sup>T</sup>) as the type strain.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"<i>Photobacterium piscicola</i> sp nov., isolated from marine fish and spoiled packed cod","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:01.897972","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Photobacterium piscicola sp nov.; Polyphasic taxonomy; Fingerprinting","OtherDescriptors":null,"Notes":null,"AnaPub":2014,"MonPub":null,"DateUpdate":"2018-08-27","DateCreate":"2015-05-21","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000339366200003","VABBcode":null,"OpenAcc":0,"DOI":"10.1016/j.syapm.2014.05.003"},"refs":null,"anarec":{"AnaID":246976,"PubliDate":2014,"Pagination":"329-335","XtraPublOfAnaID":null,"ISBN":null,"Volume":"37","Issue":"5","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":43944,"SerRR":"Systematic and Applied Microbiology. Elsevier: Jena.  ISSN 0723-2020; e-ISSN 1618-0984","StandardTitleSer":"Systematic and Applied Microbiology","ISSN":"0723-2020","AbbrevSer":"Syst. Appl. 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