{"refrec":{"BRefID":248394,"RR":"<b>Melton, J.T.; Leliaert, F.; Tronholm, A.; Lopez-Bautista, J.M.</b> (2015). The complete chloroplast and mitochondrial genomes of the green macroalga <i>Ulva</i> sp. UNA00071828 (Ulvophyceae, Chlorophyta). <i>PLoS One 10(4)</i>: e0121020. <a href=\"http://dx.doi.org/10.1371/journal.pone.0121020\" target=\"_blank\">http://dx.doi.org/10.1371/journal.pone.0121020</a>","BEntID":240099,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>PLoS One 10(4)</i>: e0121020. <a href=\"http://dx.doi.org/10.1371/journal.pone.0121020\" target=\"_blank\">http://dx.doi.org/10.1371/journal.pone.0121020</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Melton, J.T.; Leliaert, F.; Tronholm, A.; Lopez-Bautista, J.M.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Melton, J.T. <i>et al.</i>","Englishabstract":"Sequencing mitochondrial and chloroplast genomes has become an integral part in understanding the genomic machinery and the phylogenetic histories of green algae. Previously, only three chloroplast genomes (<em>Oltmannsiellopsis viridis</em>, <em>Pseudendoclonium akinetum</em>, and Bryopsis hypnoides) and two mitochondrial genomes (<em>O</em>. <em>viridis</em> and <em>P</em>. <em>akinetum</em>) from the class Ulvophyceae have been published. Here, we present the first chloroplast and mitochondrial genomes from the ecologically and economically important marine, green algal genus <em>Ulva</em>. The chloroplast genome of <em>Ulva</em> sp. was 99,983 bp in a circular-mapping molecule that lacked inverted repeats, and thus far, was the smallest ulvophycean plastid genome. This cpDNA was a highly compact, AT-rich genome that contained a total of 102 identified genes (71 protein-coding genes, 28 tRNA genes, and three ribosomal RNA genes). Additionally, five introns were annotated in four genes: <em>atp</em>A (1), <em>pet</em>B (1), <em>psb</em>B (2), and <em>rrl</em> (1). The circular-mapping mitochondrial genome of <em>Ulva</em> sp. was 73,493 bp and follows the expanded pattern also seen in other ulvophyceans and trebouxiophyceans. The <em>Ulva</em> sp. mtDNA contained 29 protein-coding genes, 25 tRNA genes, and two rRNA genes for a total of 56 identifiable genes. Ten introns were annotated in this mtDNA: <em>cox</em>1 (4), <em>atp</em>1 (1), <em>nad</em>3 (1), <em>nad</em>5 (1), and <em>rrs</em> (3). Double-cut-and-join (DCJ) values showed that organellar genomes across Chlorophyta are highly rearranged, in contrast to the highly conserved organellar genomes of the red algae (Rhodophyta). A phylogenomic investigation of 51 plastid protein-coding genes showed that Ulvophyceae is not monophyletic, and also placed Oltmannsiellopsis (Oltmannsiellopsidales) and <em>Tetraselmis</em> (Chlorodendrophyceae) closely to <em>Ulva</em> (Ulvales) and <em>Pseudendoclonium</em> (Ulothrichales).","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"The complete chloroplast and mitochondrial genomes of the green macroalga <i>Ulva</i> sp. UNA00071828 (Ulvophyceae, Chlorophyta)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2015,"MonPub":null,"DateUpdate":"2016-06-12","DateCreate":"2015-07-03","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000352477800041","VABBcode":null,"OpenAcc":1,"DOI":"10.1371/journal.pone.0121020"},"refs":null,"anarec":{"AnaID":248394,"PubliDate":2015,"Pagination":"e0121020","XtraPublOfAnaID":null,"ISBN":null,"Volume":"10","Issue":"4","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":123954,"SerRR":"PLoS One. Public Library of Science: San Francisco.  ISSN 1932-6203; e-ISSN 1932-6203","StandardTitleSer":"PLoS One","ISSN":"1932-6203","AbbrevSer":"PLoS One","StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Melton","Firstname":"James","Initials":"J.T.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":240099,"AutID":199047,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Leliaert","Firstname":"Frederik","Initials":"F.","Affiliation":"Department of Biological Sciences, The University of Alabama","Discriminator":null,"CorporateFlag":0,"BEntID":240099,"AutID":199049,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":"0000-0002-4627-7318","PersID":227,"InsID":null},{"AutName":"Tronholm","Firstname":"Ana","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":240099,"AutID":158643,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":19477,"InsID":null},{"AutName":"Lopez-Bautista","Firstname":"Juan","Initials":"J.M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":240099,"AutID":41149,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":273115,"LibID":36,"BRefID":248394,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"273115","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Public Library of Science","City":"San Francisco"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":[{"Collection":"OMA - Open Marien Archief","ShortName":"OMA"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"221":{"SpName":"OMA - Open Marien Archief","SpColID":221,"ParSpColID":null,"TopParID":null,"ShortName":"OMA","URLLocation":null,"LibID":36,"OpenRepoFlag":1,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OMA"},"422":{"SpName":"Section Marine Biology","SpColID":422,"ParSpColID":null,"TopParID":null,"ShortName":"MarBiol","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"MarBiol"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":240099,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"http://dx.doi.org/10.1371/journal.pone.0121020","externalID":"10.1371/journal.pone.0121020","URLTypeCode":"DOI","URLID":40807,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2015-07-03 08:22:10.230000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Lyssens, Liesbeth, L.","updSesDate":{"date":"2016-06-12 21:47:24.110000","timezone_type":3,"timezone":"Europe/Brussels"}}}