{"refrec":{"BRefID":251024,"RR":"<b>Yuling, Y.; Zhang, X.; Yuan, J.; Li, F.; Chen, X.; Zhao, Y.; Huang, L.; Zheng, H.; Xiang, J.</b> (2015). Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific white shrimp <i>Litopenaeus vannamei</i>. <i>NPG Scientific Reports 5(15612)</i>: 14 pp. <a href=\"http://dx.doi.org/10.1038/srep15612\" target=\"_blank\">http://dx.doi.org/10.1038/srep15612</a>","BEntID":242719,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>NPG Scientific Reports 5(15612)</i>: 14 pp. <a href=\"http://dx.doi.org/10.1038/srep15612\" target=\"_blank\">http://dx.doi.org/10.1038/srep15612</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Yuling, Y.; Zhang, X.; Yuan, J.; Li, F.; Chen, X.; Zhao, Y.; Huang, L.; Zheng, H.; Xiang, J.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Yuling, Y. <i>et al.</i>","Englishabstract":"The Pacific white shrimp <i>Litopenaeus vannamei</i> is the dominant crustacean species in global seafood mariculture. Understanding the genome and genetic architecture is useful for deciphering complex traits and accelerating the breeding program in shrimp. In this study, a genome survey was conducted and a high-density linkage map was constructed using a next-generation sequencing approach. The genome survey was used to identify preliminary genome characteristics and to generate a rough reference for linkage map construction. De novo SNP discovery resulted in 25,140 polymorphic markers. A total of 6,359 high-quality markers were selected for linkage map construction based on marker coverage among individuals and read depths. For the linkage map, a total of 6,146 markers spanning 4,271.43?cM were mapped to 44 sex-averaged linkage groups, with an average marker distance of 0.7?cM. An integration analysis linked 5,885 genome scaffolds and 1,504 BAC clones to the linkage map. Based on the high-density linkage map, several QTLs for body weight and body length were detected. This high-density genetic linkage map reveals basic genomic architecture and will be useful for comparative genomics research, genome assembly and genetic improvement of <i>L. vannamei</i> and other penaeid shrimp species.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Genome survey and high-density genetic map construction provide genomic and genetic resources for the Pacific white shrimp <i>Litopenaeus vannamei</i>","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-05-12 01:32:42.896915","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2015,"MonPub":null,"DateUpdate":"2018-02-13","DateCreate":"2015-11-13","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000363454300003","VABBcode":null,"OpenAcc":1,"DOI":"10.1038/srep15612"},"refs":null,"anarec":{"AnaID":251024,"PubliDate":2015,"Pagination":"14 pp","XtraPublOfAnaID":null,"ISBN":null,"Volume":"5","Issue":"15612","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":208093,"SerRR":"Scientific Reports (Nature Publishing Group). 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