{"refrec":{"BRefID":280923,"RR":"<b>Médigue, C.; Krin, E.; Pascal, G.; Barbe, V.; Bernsel, A.; Bertin, P.N.; Cheung, F.; Cruveiller, S.; D'Amico, S.; Duilio, A.; Fang, G.; Feller, G.; Ho, C.; Mangenot, S.; Marino, G.; Nilsson, J.; Parrilli, E.; Rocha, E.P.C.; Rouy, Z.; Sekowska, A.; Tutino, M.L.; Vallenet, D.; von Heijne, G.; Danchin, A.</b> (2005). Coping with cold: the genome of the versatile marine Antarctica bacterium <i>Pseudoalteromonas haloplanktis</i> TAC125. <i>Genome Research 15(10)</i>: 1325-1335. <a href=\"http://dx.doi.org/10.1101/gr.4126905\" target=\"_blank\">dx.doi.org/10.1101/gr.4126905</a>","BEntID":272942,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>Genome Research 15(10)</i>: 1325-1335. <a href=\"https://dx.doi.org/10.1101/gr.4126905\" target=\"_blank\">https://dx.doi.org/10.1101/gr.4126905</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Médigue, C.; Krin, E.; Pascal, G.; Barbe, V.; Bernsel, A.; Bertin, P.N.; Cheung, F.; Cruveiller, S.; D'Amico, S.; Duilio, A.; Fang, G.; Feller, G.; Ho, C.; Mangenot, S.; Marino, G.; Nilsson, J.; Parrilli, E.; Rocha, E.P.C.; Rouy, Z.; Sekowska, A.; Tutino, M.L.; Vallenet, D.; von Heijne, G.; Danchin, A.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Médigue, C. <i>et al.</i>","Englishabstract":"A considerable fraction of life develops in the sea at temperatures lower than 15°C. Little is known about the adaptive features selected under those conditions. We present the analysis of the genome sequence of the fast growing Antarctica bacterium <i>Pseudoalteromonas haloplanktis</i> TAC125. We find that it copes with the increased solubility of oxygen at low temperature by multiplying dioxygen scavenging while deleting whole pathways producing reactive oxygen species. Dioxygen-consuming lipid desaturases achieve both protection against oxygen and synthesis of lipids making the membrane fluid. A remarkable strategy for avoidance of reactive oxygen species generation is developed by <i>P. haloplanktis</i>, with elimination of the ubiquitous molybdopterin-dependent metabolism. The <i>P. haloplanktis</i> proteome reveals a concerted amino acid usage bias specific to psychrophiles, consistently appearing apt to accommodate asparagine, a residue prone to make proteins age. 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