{"refrec":{"BRefID":282643,"RR":"<b>Philippe, A.; Plumejeaud-Perreau, C.; Jourde, J.; Pineau, P.; Lachaussée, N.; Joyeux, E.; Corre, F.; Delaporte, P.; Bocher, P.</b> (2017). Building a database for long-term monitoring of benthic macrofauna in the Pertuis-Charentais (2004-2014). <i>Biodiversity Data Journal 5</i>: e10288. <a href=\"https://dx.doi.org/10.3897/bdj.5.e10288\" target=\"_blank\">https://dx.doi.org/10.3897/bdj.5.e10288</a>","BEntID":274661,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Biodiversity Data Journal 5</i>: e10288. <a href=\"https://dx.doi.org/10.3897/bdj.5.e10288\" target=\"_blank\">https://dx.doi.org/10.3897/bdj.5.e10288</a>","DocTypID":20,"DocType":"Data paper","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Philippe, A.; Plumejeaud-Perreau, C.; Jourde, J.; Pineau, P.; Lachaussée, N.; Joyeux, E.; Corre, F.; Delaporte, P.; Bocher, P.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Philippe, A. <i>et al.</i>","Englishabstract":"Long-term benthic monitoring is rewarding in terms of science, but labour-intensive, whether in the field, the laboratory, or behind the computer. Building and managing databases require multiple skills, including consistency over time as well as organisation via a systematic approach. Here, we introduce and share our spatially explicit benthic database, comprising 11 years of benthic data. It is the result of intensive benthic sampling that has been conducted on a regular grid (259 stations) covering the intertidal mudflats of the Pertuis-Charentais (Marennes-Oléron Bay and Aiguillon Bay). Samples were taken by foot or by boats during winter depending on tidal height, from December 2003 to February 2014. The present dataset includes abundances and biomass densities of all mollusc species of the study regions and principal polychaetes as well as their length, accessibility to shorebirds, energy content and shell mass when appropriate and available. This database has supported many studies dealing with the spatial distribution of benthic invertebrates and temporal variations in food resources for shorebird species as well as latitudinal comparisons with other databases. In this paper, we introduce our benthos monitoring, share our data, and present a \"guide of good practices\" for building, cleaning and using it efficiently, providing examples of results with associated R code.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Building a database for long-term monitoring of benthic macrofauna in the Pertuis-Charentais (2004-2014)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Intertidal mudflats; benthic macrofauna; annelids; Pertuis-Charentais; shorebirds; database management","OtherDescriptors":null,"Notes":null,"AnaPub":2017,"MonPub":null,"DateUpdate":"2019-03-18","DateCreate":"2017-01-13","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000449730500001","VABBcode":null,"OpenAcc":1,"DOI":"10.3897/bdj.5.e10288"},"refs":null,"anarec":{"AnaID":282643,"PubliDate":2017,"Pagination":"e10288","XtraPublOfAnaID":null,"ISBN":null,"Volume":"5","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":250111,"SerRR":"Biodiversity Data Journal. Pensoft Publishers: Sofia.  ISSN 1314-2836; e-ISSN 1314-2828","StandardTitleSer":"Biodiversity Data Journal","ISSN":"1314-2836","AbbrevSer":null,"StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Philippe","Firstname":"Anne","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":247627,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Plumejeaud-Perreau","Firstname":"Christine","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":247628,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Jourde","Firstname":"Jérôme","Initials":"J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":77978,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Pineau","Firstname":"Philippe","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":247629,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Lachaussée","Firstname":"Nicolas","Initials":"N.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":247630,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Joyeux","Firstname":"Emmanuel","Initials":"E.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":24839,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Corre","Firstname":"Frédéric","Initials":"F.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":247631,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Delaporte","Firstname":"Philippe","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":189821,"OrderNr":8,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Bocher","Firstname":"Pierrick","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":274661,"AutID":38491,"OrderNr":9,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":[{"DasID":5474,"Acronym":null,"Citation":"Philippe A., Plumejeaud-Perreau C., Jourde J., Pineau P., Lachaussée N., Joyeux E., Corre F., Delaporte P. Bocher P. (2016): Benthos monitoring in the intertidal mudflats of Pertuis-Charentais (Bay of Biscay) from 2004 on.","StandardTitle":"Benthos monitoring in the intertidal mudflats of Pertuis-Charentais (Bay of Biscay) from 2004 on","RelationID":3,"DOI":"10.14284/247"}],"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":298175,"LibID":36,"BRefID":282643,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"298175","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Pensoft Publishers","City":"Sofia"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Molluscs","ThestID":9785,"Acronym":"ASFA","ThesTermPath":"Molluscs"},{"ThesaurusTerm":"Monitoring","ThestID":5312,"Acronym":"ASFA","ThesTermPath":"Monitoring"}],"thestermsASFA":[{"ThesaurusTerm":"Monitoring"}],"taxtermsASFA":[{"TaxTerm":"Annelida"},{"TaxTerm":"Aves"}],"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":274661,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":274661,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"doi.org/10.14284/247","externalID":"10.14284/247","URLTypeCode":null,"URLID":74847,"URLTypID":37,"URLType":"Additional info","URLPrefix":null},{"URL":"https://dx.doi.org/10.3897/bdj.5.e10288","externalID":"10.3897/bdj.5.e10288","URLTypeCode":"DOI","URLID":74846,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Molluscs","ThestID":9785,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Monitoring","ThestID":5312,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxterms":[{"TaxTerm":"Annelida [segmented worms]","AphiaID":882,"TaxtID":15155},{"TaxTerm":"Aves [Birds]","AphiaID":1836,"TaxtID":19285}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Molluscs","DutchTerm":"Weekdieren","ThestID":9785,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Monitoring","DutchTerm":"Monitoring","ThestID":5312,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"}],"taxtermsFRIS":[{"TaxTerm":"Annelida","DutchTerm":"Gelede wormen","AphiaID":882,"TaxtID":15155},{"TaxTerm":"Aves","DutchTerm":"Vogels","AphiaID":1836,"TaxtID":19285}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2017-01-13 08:31:40.360000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Lust, Heike, H.","updSesDate":{"date":"2019-03-18 10:33:30.697000","timezone_type":3,"timezone":"Europe/Brussels"}}}
