{"refrec":{"BRefID":288150,"RR":"<b>Vanden Berghe, E.; Coro, G.; Bailly, N.; Fiorellato, F.; Aldemita, C.; Ellenbroek, A.; Pagano, P.</b> (2015). Retrieving taxa names from large biodiversity data collections using a flexible matching workflow. <i>Ecological Informatics 28</i>: 29-41. <a href=\"https://dx.doi.org/10.1016/j.ecoinf.2015.05.004\" target=\"_blank\">https://dx.doi.org/10.1016/j.ecoinf.2015.05.004</a>","BEntID":280176,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>Ecological Informatics 28</i>: 29-41. <a href=\"https://dx.doi.org/10.1016/j.ecoinf.2015.05.004\" target=\"_blank\">https://dx.doi.org/10.1016/j.ecoinf.2015.05.004</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Vanden Berghe, E.; Coro, G.; Bailly, N.; Fiorellato, F.; Aldemita, C.; Ellenbroek, A.; Pagano, P.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Vanden Berghe, E. <i>et al.</i>","Englishabstract":"In the domain of biological classification there are several taxon name matching services that can search for a species scientific name in a large collection of taxonomic names. Many of these services are available online, and many others run on computers of individual scientists. While these systems may work very well, most suffer from the fact that the list of names used as a reference, and the criteria to decide on a match, are hard-coded in the engine that performs the name matching. In this paper we present BiOnym, a taxon name matching system that separates reference namelists, search criteria and matching engine. The user is offered a choice of several taxonomic reference lists, including the option to upload his/her own list onto the system. Furthermore, BiOnym is a flexible workflow, which embeds and combines techniques using lexical matching algorithms as well as expert knowledge. It is also an open platform allowing developers to contribute with new techniques. In this paper we demonstrate the benefits brought by this approach in terms of the efficiency and effectiveness of the information retrieval process with respect to other solutions.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Retrieving taxa names from large biodiversity data collections using a flexible matching workflow","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Taxon name matching, Taxonomic Authority File, Taxon name parsing, Name matcher chain, Taxonomy, Taxonomic nomenclature","OtherDescriptors":null,"Notes":null,"AnaPub":2015,"MonPub":null,"DateUpdate":"2019-06-28","DateCreate":"2017-08-16","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000358104500004","VABBcode":null,"OpenAcc":0,"DOI":"10.1016/j.ecoinf.2015.05.004"},"refs":null,"anarec":{"AnaID":288150,"PubliDate":2015,"Pagination":"29-41","XtraPublOfAnaID":null,"ISBN":null,"Volume":"28","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":195051,"SerRR":"Ecological Informatics. Elsevier: Amsterdam.  ISSN 1574-9541; e-ISSN 1878-0512","StandardTitleSer":"Ecological Informatics","ISSN":"1574-9541","AbbrevSer":null,"StandardTitleMon":null,"StartPage":29,"Pages":13,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Vanden Berghe","Firstname":"Edward","Initials":"E.","Affiliation":"Vrije Universiteit Brussel (VUB)","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":205063,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"VUB","InsFSN":"Vrije Universiteit Brussel","ORCID":null,"PersID":55,"InsID":2956},{"AutName":"Coro","Firstname":"Gianpaolo","Initials":"G.","Affiliation":"CNR, Ist Sci & Tecnol Informaz A Faedo, I-56124 Pisa, Italy.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305234,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Bailly","Firstname":"Nicolas","Initials":"N.","Affiliation":"WorldFish, George Town, Malaysia.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305235,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":5243,"InsID":null},{"AutName":"Fiorellato","Firstname":"Fabio","Initials":"F.","Affiliation":"FAO, Dept Fisheries & Aquaculture, Stat & Informat FIPS, I-00100 Rome, Italy.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305236,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Aldemita","Firstname":"Caselyn","Initials":"C.","Affiliation":"FishBase Informat & Res Grp Inc FIN, Los Banos, Laguna, Philippines.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305237,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Ellenbroek","Firstname":"Anton","Initials":"A.","Affiliation":"FAO, Dept Fisheries & Aquaculture, Stat & Informat FIPS, I-00100 Rome, Italy.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305238,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Pagano","Firstname":"Pasquale","Initials":"P.","Affiliation":"CNR, Ist Sci & Tecnol Informaz A Faedo, I-56124 Pisa, Italy.","Discriminator":null,"CorporateFlag":0,"BEntID":280176,"AutID":305239,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":308327,"LibID":36,"BRefID":288150,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":null,"ShelfLocCode":"308327","RFID":null,"PaidValue":null,"Medium":"Server","Description":"Interne VLIZ documenten","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Non-open access","URL":null,"ClassifID":228,"Classification":"Non-open access","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":1,"Disclaimer":"Disclaimer_VLIZ_Intern","DutchDisclaimer":"<p>Deze publicatie is enkel beschikbaar voor persoonlijk gebruik binnen de Innovocean site <br />en mag op geen enkele manier verder worden verspreid.</p>","FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Elsevier","City":"Amsterdam"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"955":{"SpName":"Catalogue of Life acknowledged","SpColID":955,"ParSpColID":null,"TopParID":null,"ShortName":"Catalogue of Life ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"Catalogue of Life ackn"},"942":{"SpName":"Interim Register of Marine and Nonmarine Genera (IRMNG) acknowledged","SpColID":942,"ParSpColID":941,"TopParID":39,"ShortName":"IRMNG ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/IRMNG ackn"},"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":280176,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":280176,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1016/j.ecoinf.2015.05.004","externalID":"10.1016/j.ecoinf.2015.05.004","URLTypeCode":"DOI","URLID":57178,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"VLIZ2000\\sielc","newSesDate":{"date":"2017-08-16 08:22:35.213000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2019-06-28 08:33:51.383000","timezone_type":3,"timezone":"Europe/Brussels"}}}
