{"refrec":{"BRefID":289171,"RR":"<b>Marques, J.P.; Sotelo, G.; Larsson, T.; Johannesson, K.; Panova, M.; Faria, R.</b> (2017). Comparative mitogenomic analysis of three species of periwinkles: <i>Littorina fabalis, L. obtusata</i> and <i>L. saxatilis</i>. <i>Marine Genomics 32</i>: 41-47. <a href=\"https://dx.doi.org/10.1016/j.margen.2016.10.006\" target=\"_blank\">https://dx.doi.org/10.1016/j.margen.2016.10.006</a>","BEntID":281208,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":null,"RefStringPartII":". <i>Marine Genomics 32</i>: 41-47. <a href=\"https://dx.doi.org/10.1016/j.margen.2016.10.006\" target=\"_blank\">https://dx.doi.org/10.1016/j.margen.2016.10.006</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Marques, J.P.; Sotelo, G.; Larsson, T.; Johannesson, K.; Panova, M.; Faria, R.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Marques, J.P. <i>et al.</i>","Englishabstract":"The flat periwinkles, <i>Littorina fabalis</i> and <i>L. obtusata</i>, offer an interesting system for local adaptation and ecological speciation studies. In order to provide genomic resources for these species, we sequenced their mitogenomes together with that of the rough periwinkle <i>L. saxatilis</i> by means of next-generation sequencing technologies. The three mitogenomes present the typical repertoire of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and a putative control region. Although the latter could not be fully recovered in flat periwinkles using short-reads due to a highly repetitive fragment, in <i>L. saxatilis</i> this problem was overcome with additional long-reads and we were able to assemble the complete mitogenome. Both gene order and nucleotide composition are similar between the three species as well as compared to other Littorinimorpha. A large variance in divergence was observed across mitochondrial regions, with six- to ten-fold difference between the highest and the lowest divergence rates. Based on nucleotide changes on the whole molecule and assuming a molecular clock, <i>L. fabalis</i> and <i>L. obtusata</i> started to diverge around 0.8 Mya (0.4–1.1 Mya). The evolution of the mitochondrial protein-coding genes in the three <i>Littorina</i> species appears mainly influenced by purifying selection as revealed by phylogenetic tests based on <i>d</i><sub><i>N</i></sub><i>/d</i><sub><i>S</i></sub> ratios that did not detect any evidence for positive selection, although some caution is required given the limited power of the dataset and the implemented approaches.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Comparative mitogenomic analysis of three species of periwinkles: <i>Littorina fabalis, L. obtusata</i> and <i>L. saxatilis</i>","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"annotation; assembly; Gastropoda; mtDNA divergence; selection","OtherDescriptors":null,"Notes":null,"AnaPub":2017,"MonPub":null,"DateUpdate":"2017-09-19","DateCreate":"2017-09-18","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000399519700006","VABBcode":null,"OpenAcc":0,"DOI":"10.1016/j.margen.2016.10.006"},"refs":null,"anarec":{"AnaID":289171,"PubliDate":2017,"Pagination":"41-47","XtraPublOfAnaID":null,"ISBN":null,"Volume":"32","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":126432,"SerRR":"Marine Genomics. 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