{"refrec":{"BRefID":289307,"RR":"<b>Bendif, E.M.; Probert, I.; Carmichael, M.; Romac, S.; Hagino, K.; de Vargas, C.</b> (2014). Genetic delineation between and within the widespread coccolithophore morpho-species <i>Emiliania huxleyi</i> and <i>Gephyrocapsa oceanica</i> (Haptophyta). <i>J. Phycol. 50(1)</i>: 140-148. <a href=\"https://dx.doi.org/10.1111/jpy.12147\" target=\"_blank\">https://dx.doi.org/10.1111/jpy.12147</a>","BEntID":281344,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":null,"RefStringPartII":". <i>J. Phycol. 50(1)</i>: 140-148. <a href=\"https://dx.doi.org/10.1111/jpy.12147\" target=\"_blank\">https://dx.doi.org/10.1111/jpy.12147</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Bendif, E.M.; Probert, I.; Carmichael, M.; Romac, S.; Hagino, K.; de Vargas, C.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Bendif, E.M. <i>et al.</i>","Englishabstract":"<i>Emiliania huxleyi</i> and <i>Gephyrocapsa oceanica</i> are abundant coccolithophore morpho-species that play key roles in ocean carbon cycling due to their importance as both primary producers and cal-cifiers. Global change processes such as ocean acidification impact these key calcifying species. The physiology of <i>E. huxleyi,</i> a developing model species, has been widely studied, but its genetic delineation from <i>G. oceanica</i> remains unclear due to a lack of resolution in classical genetic markers. Using nuclear (18S rDNA and 28S rDNA), mitochondrial (<i>cox1, cox2, cox3, rpl16,</i> and <i>dam</i>), and plastidial (16S rDNA,<i> rbcL</i>,<i> tufA,</i> and <i>petA</i>) DNA markers from 99 <i>E. huxleyi</i> and 44 <i>G. oceanica</i> strains, we conducted a multigene/multistrain survey to compare the suitability of different markers for resolving phylogenetic patterns within and between these two morpho-species. The nuclear genes tested did not provide sufficient resolution to discriminate between the two morpho-species that diverged only 291Kya. Typical patterns of incomplete lineage sorting were generated in phylogenetic analyses using plastidial genes. In contrast, full morpho-species delineation was achieved with mitochondrial markers and common intra-morpho-species phylogenetic patterns were observed despite differing rates of DNA substitution. Mitochondrial genes are thus promising barcodes for distinguishing these coccolithophore morpho-species, in particular in the context of environmental monitoring.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Genetic delineation between and within the widespread coccolithophore morpho-species <i>Emiliania huxleyi</i> and <i>Gephyrocapsa oceanica</i> (Haptophyta)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-04-20 01:32:23.295185","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"coccolithophore; DNA barcoding; Emiliania huxleyi; Gephyrocapsaoceanica; phylogeny; species complex","OtherDescriptors":null,"Notes":null,"AnaPub":2014,"MonPub":null,"DateUpdate":"2017-09-21","DateCreate":"2017-09-18","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000332001200013","VABBcode":null,"OpenAcc":0,"DOI":"10.1111/jpy.12147"},"refs":null,"anarec":{"AnaID":289307,"PubliDate":2014,"Pagination":"140-148","XtraPublOfAnaID":null,"ISBN":null,"Volume":"50","Issue":"1","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":43251,"SerRR":"Journal of Phycology. Blackwell Science: New York.  ISSN 0022-3646; e-ISSN 1529-8817","StandardTitleSer":"Journal of Phycology","ISSN":"0022-3646","AbbrevSer":"J. Phycol.","StandardTitleMon":null,"StartPage":140,"Pages":9,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Bendif","Firstname":"El Mahdi","Initials":"E.M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":271547,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Probert","Firstname":"Ian","Initials":"I.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":76514,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Carmichael","Firstname":"Margaux","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":174875,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Romac","Firstname":"Sarah","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":197395,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Hagino","Firstname":"Kyoko","Initials":"K.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":270877,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"de Vargas","Firstname":"Colomban","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":281344,"AutID":43589,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":307136,"LibID":36,"BRefID":289307,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"307136","RFID":null,"PaidValue":null,"Medium":"Server","Description":"Interne VLIZ documenten","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Non-open access","URL":null,"ClassifID":228,"Classification":"Non-open access","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":1,"Disclaimer":"Disclaimer_VLIZ_Intern","DutchDisclaimer":"<p>Deze publicatie is enkel beschikbaar voor persoonlijk gebruik binnen de Innovocean site <br />en mag op geen enkele manier verder worden verspreid.</p>","FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Blackwell Science","City":"New York"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Climate Change","ThestID":169560,"Acronym":"KTPS","ThesTermPath":"Climate Change"},{"ThesaurusTerm":"Monitoring & Surveillance","ThestID":169578,"Acronym":"KTPS","ThesTermPath":"Environmental Management > Monitoring & Surveillance"},{"ThesaurusTerm":"Exploitable Scientific Result","ThestID":169539,"Acronym":"KTPKO","ThesTermPath":"Exploitable Scientific Result"},{"ThesaurusTerm":"Marine Sciences","ThestID":169563,"Acronym":"KTPS","ThesTermPath":"Marine Sciences"},{"ThesaurusTerm":"Marine Genomics","ThestID":169586,"Acronym":"KTPS","ThesTermPath":"Marine Sciences > Marine Genomics"},{"ThesaurusTerm":"Scientific Community","ThestID":169557,"Acronym":"KTPUT","ThesTermPath":"Scientific Community"},{"ThesaurusTerm":"Scientific Publication","ThestID":169548,"Acronym":"KTPKO","ThesTermPath":"Scientific Publication"}],"thestermsASFA":[{"ThesaurusTerm":"Climate Change"},{"ThesaurusTerm":"Exploitable Scientific Result"},{"ThesaurusTerm":"Marine Genomics"},{"ThesaurusTerm":"Marine Sciences"},{"ThesaurusTerm":"Monitoring & Surveillance"},{"ThesaurusTerm":"Scientific Community"},{"ThesaurusTerm":"Scientific Publication"}],"taxtermsASFA":null,"geotermsASFA":null,"collections":null,"conf":null,"proj":[{"ProID":4198,"Acronym":"ASSEMBLE","ProStandardTitle":"Association of European marine biological laboratories","BYear":2009,"BMonth":3,"EYear":2013,"EMonth":2,"FP7Code":"A-2008","RelID":null,"Relation":null,"DutchTerm":null}],"Physdatasets":null,"spcols":{"990":{"SpName":"Assemble","SpColID":990,"ParSpColID":null,"TopParID":null,"ShortName":"Assemble","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"Assemble"},"951":{"SpName":"AssembleMarine","SpColID":951,"ParSpColID":990,"TopParID":990,"ShortName":"AssembleMarine","URLLocation":null,"LibID":null,"OpenRepoFlag":0,"SpTypID":null,"TopParIDNotWebsite":990,"SpColPath":"Assemble/AssembleMarine"},"950":{"SpName":"EMBRC","SpColID":950,"ParSpColID":null,"TopParID":null,"ShortName":"EMBRC","URLLocation":null,"LibID":null,"OpenRepoFlag":0,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"EMBRC"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":281344,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":281344,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1111/jpy.12147","externalID":"10.1111/jpy.12147","URLTypeCode":"DOI","URLID":58180,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Climate Change","ThestID":169560,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Exploitable Scientific Result","ThestID":169539,"Acronym":"KTPKO","ThesTypID":8,"ThesType":"Assemble KO Types"},{"ThesaurusTerm":"Marine Genomics","ThestID":169586,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Marine Sciences","ThestID":169563,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Monitoring & Surveillance","ThestID":169578,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Scientific Community","ThestID":169557,"Acronym":"KTPUT","ThesTypID":9,"ThesType":"Assemble User Types"},{"ThesaurusTerm":"Scientific Publication","ThestID":169548,"Acronym":"KTPKO","ThesTypID":8,"ThesType":"Assemble KO Types"}],"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Climate Change","DutchTerm":null,"ThestID":169560,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Exploitable Scientific Result","DutchTerm":null,"ThestID":169539,"Acronym":"KTPKO","ThesTypID":8,"ThesType":"Assemble KO Types"},{"ThesaurusTerm":"Marine Genomics","DutchTerm":null,"ThestID":169586,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Marine Sciences","DutchTerm":null,"ThestID":169563,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Monitoring & Surveillance","DutchTerm":null,"ThestID":169578,"Acronym":"KTPS","ThesTypID":10,"ThesType":"Assemble Sectors"},{"ThesaurusTerm":"Scientific Community","DutchTerm":null,"ThestID":169557,"Acronym":"KTPUT","ThesTypID":9,"ThesType":"Assemble User Types"},{"ThesaurusTerm":"Scientific Publication","DutchTerm":null,"ThestID":169548,"Acronym":"KTPKO","ThesTypID":8,"ThesType":"Assemble KO Types"}],"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Lyssens, Liesbeth, L.","newSesDate":{"date":"2017-09-18 22:10:53.193000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2017-09-21 08:23:26.587000","timezone_type":3,"timezone":"Europe/Brussels"}}}