{"refrec":{"BRefID":290260,"RR":"<b>Lee; Gim; Lim; Kim; Nam; Kim</b> (2018). <i>Ty3</i>/Gypsy retrotransposons in the Pacific abalone <i>Haliotis discus hannai</i>: characterization and use for species identification in the genus <i>Haliotis</i>. <i>Genes & Genomics 40(2)</i>: 177-187. <a href=\"https://dx.doi.org/10.1007/s13258-017-0619-3\" target=\"_blank\">https://dx.doi.org/10.1007/s13258-017-0619-3</a>","BEntID":282300,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":null,"RefStringPartII":". <i>Genes & Genomics 40(2)</i>: 177-187. <a href=\"https://dx.doi.org/10.1007/s13258-017-0619-3\" target=\"_blank\">https://dx.doi.org/10.1007/s13258-017-0619-3</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Lee; Gim; Lim; Kim; Nam; Kim","OrigTitleTranslFlag":0,"Authorstringtrunc":"Lee <i>et al.</i>","Englishabstract":"Transposable elements are highly abundant elements that are present in all eukaryotic species. Here, we present a molecular description of abalone retrotransposon (Abret) elements. The genome of <i>Haliotis discus</i> hannai contains 130 Abret elements which were all <i>Ty3</i>/Gypsyretrotransposons. The <i>Ty1</i>/Copia elements were absent in the <i>H. discus hannai</i> genome. Most of the elements were not complete due to sequence truncation or coding region decay. However, three elements Abret-296, Abret-935, and Abret-3259 had most of the canonical features of LTR (long terminal repeat)-retrotransposons. There were several reading frame shifts in Abret-935 and Abret-3259 elements. Surprisingly, phylogenetic analysis indicated that all of the elements belonged to the Osvaldo lineage. The sequence divergence between LTRs revealed that the Abret elements were mostly active within 2 million years ago. Abret elements were used as molecular markers in SSAP analyses, which allowed clear distinction of different species in the genus <i>Haliotis</i>. The polymorphic markers were converted into SCAR markers for use in species identification by simple PCR in the <i>Haliotis</i> genus.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"<i>Ty3</i>/Gypsy retrotransposons in the Pacific abalone <i>Haliotis discus hannai</i>: characterization and use for species identification in the genus <i>Haliotis</i>","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:01.897972","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Haliotis species; abalone; Ty3/Gypsy retrotransposon; SSAP; SCAR ","OtherDescriptors":null,"Notes":null,"AnaPub":2018,"MonPub":null,"DateUpdate":"2018-02-13","DateCreate":"2017-10-24","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000423841900005","VABBcode":null,"OpenAcc":0,"DOI":"10.1007/s13258-017-0619-3"},"refs":null,"anarec":{"AnaID":290260,"PubliDate":2018,"Pagination":"177-187","XtraPublOfAnaID":null,"ISBN":null,"Volume":"40","Issue":"2","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":268587,"SerRR":"Genes & Genomics. Springer: New York.  ISSN 1976-9571; e-ISSN 2092-9293","StandardTitleSer":"Genes & Genomics","ISSN":"1976-9571","AbbrevSer":null,"StandardTitleMon":null,"StartPage":177,"Pages":11,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Lee","Firstname":"Sung-Il","Initials":"S.-I.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273809,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Gim","Firstname":"Jeong-An","Initials":"J.-A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273810,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Lim","Firstname":"Min-Ji","Initials":"M.-J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273811,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Kim","Firstname":"Heui-Soo","Initials":"H.-S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273812,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Nam","Firstname":"Bo-Hye","Initials":"B.-H.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273813,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Kim","Firstname":"Nam-Soo","Initials":"N.-S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":282300,"AutID":273814,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":null,"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Springer","City":"New York"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - 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