{"refrec":{"BRefID":329209,"RR":"<b>Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng; Reder, Tanja; Çebi, Zehra; Wittek, Sebastian; Petersen, Morten; Melkonian, Barbara; Du, Hongli; Yang, Huanming; Wang, Jian; Wong, Gane Ka-Shu; Xu, Xun; Liu, Xin; Van de Peer, Yves; Melkonian, Michael; Liu, Huan</b> (2020). The genome of <i>Prasinoderma coloniale</i> unveils the existence of a third phylum within green plants. <i>Nature Ecology & Evolution 4(9)</i>: 1220-1231. <a href=\"https://dx.doi.org/10.1038/s41559-020-1221-7\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-020-1221-7</a>","BEntID":322815,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Nature Ecology & Evolution 4(9)</i>: 1220-1231. <a href=\"https://dx.doi.org/10.1038/s41559-020-1221-7\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-020-1221-7</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Li, Linzhou; Wang, Sibo; Wang, Hongli; Sahu, Sunil Kumar; Marin, Birger; Li, Haoyuan; Xu, Yan; Liang, Hongping; Li, Zhen; Cheng, Shifeng; Reder, Tanja; Çebi, Zehra; Wittek, Sebastian; Petersen, Morten; Melkonian, Barbara; Du, Hongli; Yang, Huanming; Wang, Jian; Wong, Gane Ka-Shu; Xu, Xun; Liu, Xin; Van de Peer, Yves; Melkonian, Michael; Liu, Huan","OrigTitleTranslFlag":0,"Authorstringtrunc":"Li, Linzhou <i>et al.</i>","Englishabstract":"Genome analysis of the pico-eukaryotic marine green alga <i>Prasinoderma coloniale</i> CCMP 1413 unveils the existence of a novel phylum within green plants (Viridiplantae), the Prasinodermophyta, which diverged before the split of Chlorophyta and Streptophyta. Structural features of the genome and gene family comparisons revealed an intermediate position of the <i>P. coloniale</i> genome (25.3 Mb) between the extremely compact, small genomes of picoplanktonic Mamiellophyceae (Chlorophyta) and the larger, more complex genomes of early-diverging streptophyte algae. Reconstruction of the minimal core genome of Viridiplantae allowed identification of an ancestral toolkit of transcription factors and flagellar proteins. Adaptations of <i>P. coloniale</i> to its deep-water, oligotrophic environment involved expansion of light-harvesting proteins, reduction of early light-induced proteins, evolution of a distinct type of C<sub>4</sub> photosynthesis and carbon-concentrating mechanism, synthesis of the metal-complexing metabolite picolinic acid, and vitamin B<sub>1</sub>, B<sub>7</sub> and B<sub>12</sub> auxotrophy. The <i>P. coloniale</i> genome provides first insights into the dawn of green plant evolution.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"The genome of <i>Prasinoderma coloniale</i> unveils the existence of a third phylum within green plants","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2020,"MonPub":null,"DateUpdate":"2021-05-17","DateCreate":"2020-09-10","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000542556900001","VABBcode":null,"OpenAcc":1,"DOI":"10.1038/s41559-020-1221-7"},"refs":null,"anarec":{"AnaID":329209,"PubliDate":2020,"Pagination":"1220-1231","XtraPublOfAnaID":null,"ISBN":null,"Volume":"4","Issue":"9","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":282823,"SerRR":"Nature Ecology & Evolution. Springer Nature.  ISSN 2397-334X","StandardTitleSer":"Nature Ecology & Evolution","ISSN":"2397-334X","AbbrevSer":null,"StandardTitleMon":null,"StartPage":1220,"Pages":12,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":[{"YBRefID":329206,"RefStrFull":"<b>Piganeau, G.</b> (2020). A planktonic picoeukaryote makes big changes to the green lineage. <i>Nature Ecology & Evolution 4(9)</i>: 1160-1161. <a href=\"https://dx.doi.org/10.1038/s41559-020-1244-0\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-020-1244-0</a>","RelID":4,"Relation":"Related to","StandardTitle":"A planktonic picoeukaryote makes big changes to the green lineage"}],"relationsRev":[{"XBRefID":362809,"RefStrFull":"<b>Li, L.; Wang, S.; Wang, H.; Sahu, S.K.; Marin, B.; Li, H.; Xu, Y.; Liang, H.; Li, Z.; Cheng, S.; Reder, T.; Çebi, Z.; Wittek, S.; Petersen, M.; Melkonian, B.; Du, H.; Yang, H.; Wang, J.; Wong, G.K.-S.; Xu, X.; Liu, X.; Van de Peer, Y.; Melkonian, M.; Liu, H.</b> (2020). Author correction: The genome of <i>Prasinoderma coloniale</i> unveils the existence of a third phylum within green plants. <i>Nature Ecology & Evolution 4(9)</i>: 1280-1280. <a href=\"https://dx.doi.org/10.1038/s41559-020-1268-5\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-020-1268-5</a>","RelID":4,"RelationY":"Related to","StandardTitle":"Author correction: The genome of <i>Prasinoderma coloniale</i> unveils the existence of a third phylum within green plants"}],"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Li","Firstname":"Zhen","Initials":"Z.","Affiliation":"Department of Plant Biotechnology and Bioinformatics (Ghent University)","Discriminator":null,"CorporateFlag":0,"BEntID":322815,"AutID":444034,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Universiteit Gent; Faculteit Wetenschappen; Vakgroep Plantenbiotechnologie en Bio-informatica","ORCID":"0000-0001-8920-9270","PersID":39950,"InsID":12197},{"AutName":"Van de Peer","Firstname":"Yves","Initials":"Y.","Affiliation":"Department of Plant Biotechnology and Bioinformatics (Ghent University)","Discriminator":null,"CorporateFlag":0,"BEntID":322815,"AutID":209914,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Universiteit Gent; Faculteit Wetenschappen; Vakgroep Plantenbiotechnologie en Bio-informatica","ORCID":"0000-0003-4327-3730","PersID":19015,"InsID":12197}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":350870,"LibID":36,"BRefID":329209,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"350870","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Springer Nature","City":null}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":[{"TaxTerm":"Prasinoderma coloniale"}],"geotermsASFA":null,"collections":[{"Collection":"OMA - Open Marien Archief","ShortName":"OMA"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"221":{"SpName":"OMA - Open Marien Archief","SpColID":221,"ParSpColID":null,"TopParID":null,"ShortName":"OMA","URLLocation":null,"LibID":36,"OpenRepoFlag":1,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OMA"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":322815,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":322815,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1038/s41559-020-1221-7","externalID":"10.1038/s41559-020-1221-7","URLTypeCode":"DOI","URLID":85540,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":[{"TaxTerm":"Prasinoderma coloniale","AphiaID":375881,"TaxtID":48213}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":[{"TaxTerm":"Prasinoderma coloniale","DutchTerm":null,"AphiaID":375881,"TaxtID":48213}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2020-09-10 08:24:56.553000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2021-05-17 15:18:55.150000","timezone_type":3,"timezone":"Europe/Brussels"}}}