{"refrec":{"BRefID":337716,"RR":"<b>Salazar, V.W.; Tschoeke, D.A.; Swings, J.; Cosenza, C.A.; Mattoso, M.; Thompson, C.C.; Thompson, F.L.</b> (2020). A new genomic taxonomy system for the <i>Synechococcus</i> collective. <i>Environ. Microbiol. 22(11)</i>: 4557-4570. <a href=\"https://hdl.handle.net/10.1111/1462-2920.15173\" target=\"_blank\">https://hdl.handle.net/10.1111/1462-2920.15173</a>","BEntID":334340,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>Environ. Microbiol. 22(11)</i>: 4557-4570. <a href=\"https://hdl.handle.net/10.1111/1462-2920.15173\" target=\"_blank\">https://hdl.handle.net/10.1111/1462-2920.15173</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Salazar, V.W.; Tschoeke, D.A.; Swings, J.; Cosenza, C.A.; Mattoso, M.; Thompson, C.C.; Thompson, F.L.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Salazar, V.W. <i>et al.</i>","Englishabstract":"Cyanobacteria of the genus <i>Synechococcus</i> are major contributors to global primary productivity and are found in a wide range of aquatic ecosystems. This <i>Synechococcus</i> collective (SC) is metabolically diverse, with some lineages thriving in polar and nutrient-rich locations and others in tropical or riverine waters. Although many studies have discussed the ecology and evolution of the SC, there is a paucity of knowledge on its taxonomic structure. Thus, we present a new taxonomic classification framework for the SC based on recent advances in microbial genomic taxonomy. Phylogenomic analyses of 1085 cyanobacterial genomes demonstrate that organisms classified as <i>Synechococcus</i> are polyphyletic at the order rank. The SC is classified into 15 genera, which are placed into five distinct orders within the phylum Cyanobacteria: (i) Synechococcales (<i>Cyanobium</i>, <i>Inmanicoccus</i>, <i>Lacustricoccus</i> gen. Nov., <i>Parasynechococcus</i>, <i>Pseudosynechococcus</i>, <i>Regnicoccus</i>, <i>Synechospongium</i> gen. nov., <i>Synechococcus</i> and <i>Vulcanococcus</i>); (ii) Cyanobacteriales (<i>Limnothrix</i>); (iii) Leptococcales (<i>Brevicoccus</i> and <i>Leptococcus</i>); (iv) Thermosynechococcales (<i>Stenotopis</i> and <i>Thermosynechococcus</i>) and (v) Neosynechococcales (<i>Neosynechococcus</i>). The newly proposed classification is consistent with habitat distribution patterns (seawater, freshwater, brackish and thermal environments) and reflects the ecological and evolutionary relationships of the SC.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"A new genomic taxonomy system for the <i>Synechococcus</i> collective","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-04-17 01:32:39.103614","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2020,"MonPub":null,"DateUpdate":"2021-05-29","DateCreate":"2021-05-17","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000561702800001","VABBcode":null,"OpenAcc":0,"Handle":"10.1111/1462-2920.15173"},"refs":null,"anarec":{"AnaID":337716,"PubliDate":2020,"Pagination":"4557-4570","XtraPublOfAnaID":null,"ISBN":null,"Volume":"22","Issue":"11","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":59926,"SerRR":"Environmental Microbiology. 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