{"refrec":{"BRefID":354593,"RR":"<b>Vanwijnsberghe, S.; Peeters, C.; De Ridder, E.; Dumolin, C.; Wieme, A.D.; Boon, N.; Vandamme, P.</b> (2021). Genomic aromatic compound degradation potential of novel <i>Paraburkholderia</i> species: <i>Paraburkholderia domus</i> sp. nov., <i>Paraburkholderia haematera</i> sp. nov. and <i>Paraburkholderia nemoris</i> sp. nov. <i>International Journal of Molecular Sciences 22(13)</i>: 7003. <a href=\"https://dx.doi.org/10.3390/ijms22137003\" target=\"_blank\">https://dx.doi.org/10.3390/ijms22137003</a>","BEntID":352306,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":" <i>International Journal of Molecular Sciences 22(13)</i>: 7003. <a href=\"https://dx.doi.org/10.3390/ijms22137003\" target=\"_blank\">https://dx.doi.org/10.3390/ijms22137003</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Vanwijnsberghe, S.; Peeters, C.; De Ridder, E.; Dumolin, C.; Wieme, A.D.; Boon, N.; Vandamme, P.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Vanwijnsberghe, S. <i>et al.</i>","Englishabstract":"We performed a taxonomic and comparative genomics analysis of 67 novel <span class=\"html-italic\">Paraburkholderia</span> isolates from forest soil. Phylogenetic analysis of the <span class=\"html-italic\">recA</span> gene revealed that these isolates formed a coherent lineage within the genus <span class=\"html-italic\">Paraburkholderia</span> that also included <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">aspalathi</span>, <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">madseniana</span>, <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">sediminicola</span>, <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">caffeinilytica</span>, <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">solitsugae</span> and <span class=\"html-italic\">Paraburkholderia</span><span class=\"html-italic\">elongata</span> and four unidentified soil isolates from earlier studies. A phylogenomic analysis, along with orthoANIu and digital DNA–DNA hybridization calculations revealed that they represented four different species including three novel species and <span class=\"html-italic\">P. aspalathi</span>. Functional genome annotation of the strains revealed several pathways for aromatic compound degradation and the presence of mono- and dioxygenases involved in the degradation of the lignin-derived compounds ferulic acid and p-coumaric acid. This co-occurrence of multiple <span class=\"html-italic\">Paraburkholderia</span> strains and species with the capacity to degrade aromatic compounds in pristine forest soil is likely caused by the abundant presence of aromatic compounds in decomposing plant litter and may highlight a diversity in micro-habitats or be indicative of synergistic relationships. We propose to classify the isolates representing novel species as <span class=\"html-italic\">Paraburkholderia</span> <span class=\"html-italic\">domus</span> with LMG 31832<sup>T</sup> (=CECT 30334) as the type strain, <span class=\"html-italic\">Paraburkholderia</span> <span class=\"html-italic\">nemoris</span> with LMG 31836<sup>T</sup> (=CECT 30335) as the type strain and <span class=\"html-italic\">Paraburkholderia</span> <span class=\"html-italic\">haematera</span> with LMG 31837<sup>T</sup> (=CECT 30336) as the type strain and provide an emended description of <span class=\"html-italic\">Paraburkholderia sediminicola</span> Lim et al. 2008.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Genomic aromatic compound degradation potential of novel <i>Paraburkholderia</i> species: <i>Paraburkholderia domus</i> sp. nov., <i>Paraburkholderia haematera</i> sp. nov. and <i>Paraburkholderia nemoris</i> sp. nov.","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Paraburkholderia; aromatic compound degradation; microdiversity; comparative genomics; lignin","OtherDescriptors":null,"Notes":null,"AnaPub":2021,"MonPub":null,"DateUpdate":"2022-08-05","DateCreate":"2022-08-05","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000670914700001","VABBcode":null,"OpenAcc":1,"DOI":"10.3390/ijms22137003"},"refs":null,"anarec":{"AnaID":354593,"PubliDate":2021,"Pagination":"7003","XtraPublOfAnaID":null,"ISBN":null,"Volume":"22","Issue":"13","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":270393,"SerRR":"International Journal of Molecular Sciences. 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