{"refrec":{"BRefID":359573,"RR":"<b>Martijn, J.; Vosseberg, J.; Guy, L.; Offre, P.; Ettema, T.J.G.</b> (2022). Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact. <i>Nature Ecology & Evolution 6</i>: 1829-1831. <a href=\"https://dx.doi.org/10.1038/s41559-022-01871-3\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-022-01871-3</a>","BEntID":357288,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Nature Ecology & Evolution 6</i>: 1829-1831. <a href=\"https://dx.doi.org/10.1038/s41559-022-01871-3\" target=\"_blank\">https://dx.doi.org/10.1038/s41559-022-01871-3</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Martijn, J.; Vosseberg, J.; Guy, L.; Offre, P.; Ettema, T.J.G.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Martijn, J. <i>et al.</i>","Englishabstract":"Fan et al. challenge the finding that mitochondria represent a sister group to Alphaproteobacteria1, arguing that support for thisposition can be explained by unreliable site removal methods andoutgroup attraction. The authors chose to reduce compositionalheterogeneity by replacing AT-rich Rickettsiales and mitochondriawith GC-rich alternatives and attempted to attenuate long branchattraction (LBA) effects by removing all fast-evolving lineages butone. The study suggests that mitochondria form a sister clade toRickettsiales, within the ‘Alpha-II’ clade. Here we show that the association with Alpha-II is an artefact caused by a problematic taxonand that residual support for Rickettsiales-sister can be explained byconvergent evolution of the selected mitochondria and Rickettsialestowards high %GC. We further argue that site removal methods arein fact reliable and that outgroup attraction is unlikely to explain theAlphaproteobacteria-sister tree","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2022,"MonPub":null,"DateUpdate":"2022-12-05","DateCreate":"2022-12-01","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000871287700001","VABBcode":null,"OpenAcc":1,"DOI":"10.1038/s41559-022-01871-3"},"refs":null,"anarec":{"AnaID":359573,"PubliDate":2022,"Pagination":"1829-1831","XtraPublOfAnaID":null,"ISBN":null,"Volume":"6","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":282823,"SerRR":"Nature Ecology & Evolution. Springer Nature.  ISSN 2397-334X","StandardTitleSer":"Nature Ecology & Evolution","ISSN":"2397-334X","AbbrevSer":null,"StandardTitleMon":null,"StartPage":1829,"Pages":3,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Martijn","Firstname":"Joran","Initials":"J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":357288,"AutID":329818,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Vosseberg","Firstname":"Julian","Initials":"J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":357288,"AutID":329807,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Guy","Firstname":"Lionel","Initials":"L.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":357288,"AutID":329819,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Offre","Firstname":"Pierre","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":357288,"AutID":329816,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"MMB","InsFSN":"Koninklijk Nederlands Instituut voor Onderzoek der Zee; Marine Microbiology and Biogeochemistry","ORCID":"0000-0002-3660-2164","PersID":35708,"InsID":13655},{"AutName":"Ettema","Firstname":"Thijs","Initials":"T.J.G.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":357288,"AutID":347623,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":357288,"BEntPrivate":null,"availability":[{"BInstID":385296,"LibID":2779,"BRefID":359573,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"385296","RFID":null,"PaidValue":null,"Medium":"Server","Description":null,"Acronym":null,"Library":"NIOZ","DutchTerm":null,"URL":null,"ClassifID":260,"Classification":"NIOZ Open Repository","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":null,"LoggedInReq":null,"Disclaimer":"Disclaimer_NIOZ","DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":397,"FileFormID":6,"LendableFlag":null,"PublicFlag":1,"orderLib":"NIOZ","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null},{"BInstID":385295,"LibID":2779,"BRefID":359573,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":null,"ShelfLocCode":"385295","RFID":null,"PaidValue":null,"Medium":"Server","Description":null,"Acronym":null,"Library":"NIOZ","DutchTerm":null,"URL":null,"ClassifID":261,"Classification":"NIOZ files","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":null,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":397,"FileFormID":6,"LendableFlag":null,"PublicFlag":1,"orderLib":"NIOZ","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":805,"SERpubls":[{"PublName":"Springer Nature","City":null}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":null,"conf":null,"proj":null,"Physdatasets":null,"spcols":{"805":{"SpName":"Koninklijk Nederlands Instituut voor Onderzoek der Zee","SpColID":805,"ParSpColID":null,"TopParID":null,"ShortName":"NIOZ","URLLocation":"https://www.vliz.be/imis/nioz/imis.php?refid=","LibID":2779,"OpenRepoFlag":1,"SpTypID":1,"TopParIDNotWebsite":null,"SpColPath":"NIOZ"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":357288,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":357288,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://doi.org/10.6084/m9.figshare.17108234.v1","externalID":"10.6084/m9.figshare.17108234.v1","URLTypeCode":null,"URLID":108351,"URLTypID":37,"URLType":"Additional info","URLPrefix":null},{"URL":"https://dx.doi.org/10.1038/s41559-022-01871-3","externalID":"10.1038/s41559-022-01871-3","URLTypeCode":"DOI","URLID":108347,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Leonne.van.der.Weegen@nioz.nl","newSesDate":{"date":"2022-12-01 09:11:51.053000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Leonne.van.der.Weegen@nioz.nl","updSesDate":{"date":"2022-12-05 10:38:14.130000","timezone_type":3,"timezone":"Europe/Brussels"}}}
