{"refrec":{"BRefID":363299,"RR":"<b>Li, F.; Liu, H.; Heng, X.; Zhang, Y.; Fan, M.; Wang, S.; Liu, C.; Gu, Z.; Wang, A.; Yang, Y.</b> (2023). The complete mitochondrial genome of <i>Hyotissa sinensis</i> (Bivalvia, Ostreoidea) indicates the genetic diversity within Gryphaeidae. <i>Biodiversity Data Journal 11</i>: e101333. <a href=\"https://dx.doi.org/10.3897/bdj.11.e101333\" target=\"_blank\">https://dx.doi.org/10.3897/bdj.11.e101333</a>","BEntID":361017,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Biodiversity Data Journal 11</i>: e101333. <a href=\"https://dx.doi.org/10.3897/bdj.11.e101333\" target=\"_blank\">https://dx.doi.org/10.3897/bdj.11.e101333</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Li, F.; Liu, H.; Heng, X.; Zhang, Y.; Fan, M.; Wang, S.; Liu, C.; Gu, Z.; Wang, A.; Yang, Y.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Li, F. <i>et al.</i>","Englishabstract":"Different from the true oyster (family Ostreidae), the molecular diversity of the gryphaeid oyster (family Gryphaeidae) has never been sufficiently investigated. In the present study, the complete mitochondrial (mt) genome of <i>Hyotissa sinensis</i> was sequenced and compared with those of other ostreoids. The total length of <i>H. sinensis</i> mtDNA is 30,385 bp, encoding 12 protein-coding-genes (PCGs), 26 transfer RNA (tRNA) genes and two ribosomal RNA (rRNA) genes. The nucleotide composition and codon usage preference of <i>H. sinensis</i> mtDNA is similar to that of <i>H. hyotis</i> within the same genus. On the other hand, the presence of three <i>trnM</i> and three <i>trnL</i> genes of <i>H. sinensis</i> was not detected neither in <i>H. hyotis</i> nor other ostroid species. Another unique character of <i>H. sinensis</i> mtDNA is that both <i>rrnS</i> and <i>rrnL</i> have a nearly identical duplication. The PCG order of <i>H. sinensis</i> is identical to <i>H. hyotis</i> and the two congener species also share an identical block of 12 tRNA genes. The tRNA rearrangements mostly happen in the region from <i>Cox1</i> to <i>Nad3</i>, the same area where the duplicated genes are located. The rearrangements within Gryphaeidae could be explained by a \"repeat-random loss model\". Phylogenetic analyses revealed Gryphaeidae formed by <i>H. sinensis</i> + <i>H. hyotis</i> as sister to Ostreidae, whereas the phylogenetic relationship within the latter group remains unresolved. The present study indicated the mitogenomic diversity within Gryphaeidae and could also provide important data for future better understanding the gene order rearrangements within superfamily Ostreoidea.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"The complete mitochondrial genome of <i>Hyotissa sinensis</i> (Bivalvia, Ostreoidea) indicates the genetic diversity within Gryphaeidae","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"mitochondrial genome, gryphaeid oyster, gene order rearrangement, phylogeny","OtherDescriptors":null,"Notes":null,"AnaPub":2023,"MonPub":null,"DateUpdate":"2023-04-11","DateCreate":"2023-04-05","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:000958526600002","VABBcode":null,"OpenAcc":1,"DOI":"10.3897/bdj.11.e101333"},"refs":null,"anarec":{"AnaID":363299,"PubliDate":2023,"Pagination":"e101333","XtraPublOfAnaID":null,"ISBN":null,"Volume":"11","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":250111,"SerRR":"Biodiversity Data Journal. Pensoft Publishers: Sofia.  ISSN 1314-2836; e-ISSN 1314-2828","StandardTitleSer":"Biodiversity Data Journal","ISSN":"1314-2836","AbbrevSer":null,"StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Li","Firstname":"Fengping","Initials":"F.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527132,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Liu","Firstname":"Hongyue","Initials":"H.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527133,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Heng","Firstname":"Xin","Initials":"X.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527134,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Zhang","Firstname":"Yu","Initials":"Y.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":190859,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":27338,"InsID":null},{"AutName":"Fan","Firstname":"Mingfu","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527136,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Wang","Firstname":"Shunshun","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527137,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Liu","Firstname":"Chunsheng","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527138,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Gu","Firstname":"Zhifeng","Initials":"Z.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":527139,"OrderNr":8,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Wang","Firstname":"Aimin","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":504030,"OrderNr":9,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Yang","Firstname":"Yi","Initials":"Y.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":361017,"AutID":371897,"OrderNr":10,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":388799,"LibID":36,"BRefID":363299,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"388799","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Pensoft Publishers","City":"Sofia"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":[{"TaxTerm":"Hyotissa sinensis"}],"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":361017,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":361017,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.3897/bdj.11.e101333","externalID":"10.3897/bdj.11.e101333","URLTypeCode":"DOI","URLID":115104,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":[{"TaxTerm":"Hyotissa sinensis","AphiaID":506693,"TaxtID":42982}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":[{"TaxTerm":"Hyotissa sinensis","DutchTerm":null,"AphiaID":506693,"TaxtID":42982}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"VLIZ2000\\robbe.vanhoecke","newSesDate":{"date":"2023-04-05 08:49:33.443000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2023-04-11 08:29:48.033000","timezone_type":3,"timezone":"Europe/Brussels"}}}