{"refrec":{"BRefID":367407,"RR":"<b>Davidson, P.L.; Lessios, H.A.; Wray, G.A.; McMillan, W.O.; Prada, C.</b> (2023). Near-chromosomal-level genome assembly of the sea urchin <i>Echinometra lucunter</i>, a model for speciation in the sea. <i>Genome Biology and Evolution 15(6)</i>: evad093. <a href=\"https://dx.doi.org/10.1093/gbe/evad093\" target=\"_blank\">https://dx.doi.org/10.1093/gbe/evad093</a>","BEntID":365132,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Genome Biology and Evolution 15(6)</i>: evad093. <a href=\"https://dx.doi.org/10.1093/gbe/evad093\" target=\"_blank\">https://dx.doi.org/10.1093/gbe/evad093</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Davidson, P.L.; Lessios, H.A.; Wray, G.A.; McMillan, W.O.; Prada, C.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Davidson, P.L. <i>et al.</i>","Englishabstract":"<em>Echinometra lucunter</em>, the rock-boring sea urchin, is a widely distributed echinoid and a model for ecological studies of reproduction, responses to climate change, and speciation. We present a near chromosome-level genome assembly of <em>E. lucunter</em>, including 21 scaffolds larger than 10 Mb predicted to represent each of the chromosomes of the species. The 760.4 Mb assembly includes a scaffold N50 of 30.0 Mb and BUSCO (benchmarking universal single-copy orthologue) single copy and a duplicated score of 95.8% and 1.4%, respectively. Ab-initio gene model prediction and annotation with transcriptomic data constructed 33,989 gene models composing 50.4% of the assembly, including 37,036 transcripts. Repetitive elements make up approximately 39.6% of the assembly, and unresolved gap sequences are estimated to be 0.65%. Whole genome alignment with <em>Echinometra</em> sp. <em>EZ</em> revealed high synteny and conservation between the two species, further bolstering <em>Echinometra</em> as an emerging genus for comparative genomics studies. This genome assembly represents a high-quality genomic resource for future evolutionary and developmental studies of this species and more broadly of echinoderms.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Near-chromosomal-level genome assembly of the sea urchin <i>Echinometra lucunter</i>, a model for speciation in the sea","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"genome, assembly, sea urchin, Echinometra lucunter, echinoderm, marine speciation","OtherDescriptors":null,"Notes":null,"AnaPub":2023,"MonPub":null,"DateUpdate":"2023-11-27","DateCreate":"2023-09-25","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:001002737000001","VABBcode":null,"OpenAcc":1,"DOI":"10.1093/gbe/evad093"},"refs":null,"anarec":{"AnaID":367407,"PubliDate":2023,"Pagination":"evad093","XtraPublOfAnaID":null,"ISBN":null,"Volume":"15","Issue":"6","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":255059,"SerRR":"Genome Biology and Evolution. 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