{"refrec":{"BRefID":381204,"RR":"<b>Druce, E.; Grego, M.; Bolhuis, H.; Johnes, P.J.; Sánchez-Baracaldo, P.</b> (2023). Draft Genome Sequences of <i>Synechococcus</i> sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater <i>Syn/Pro</i> Clade Picocyanobacteria. <i>Journal of Genomics 11</i>: 26-36. <a href=\"https://dx.doi.org/10.7150/jgen.81013\" target=\"_blank\">https://dx.doi.org/10.7150/jgen.81013</a>","BEntID":378945,"PublicFlag":1,"CheckedFlag":0,"wosflag":0,"vabbflag":0,"RefStringPartII":". <i>Journal of Genomics 11</i>: 26-36. <a href=\"https://dx.doi.org/10.7150/jgen.81013\" target=\"_blank\">https://dx.doi.org/10.7150/jgen.81013</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Druce, E.; Grego, M.; Bolhuis, H.; Johnes, P.J.; Sánchez-Baracaldo, P.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Druce, E. <i>et al.</i>","Englishabstract":"<span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">Picocyanobacteria are essential primary producers in freshwaters yet little is known about their genomic diversity and ecological niches. We report here five draft genomes of freshwater picocyanobacteria: </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCAP1479/9, </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCAP1479/10, and </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCAP1479/13 isolated from Lake Windermere in the Lake District, UK; and </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCY0621 and </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCY9618 isolated from lakes in The Netherlands. Phylogenetic analysis reveals all five strains belonging to sub-cluster 5.2 of the </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> and </span><i>Prochlorococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> clade of Cyanobacteria. These five strains are divergent from </span><i>Synechococcus elongatus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">, an often-used model for freshwater </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">. Functional annotation revealed significant differences in the number of genes involved in the transport and metabolism of several macro-molecules between freshwater picocyanobacteria from sub-cluster 5.2 and </span><i>Synechococcus elongatus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">, including amino acids, lipids, and carbohydrates. Comparative genomic analysis identified further differences in the presence of photosynthesis-associated proteins while gene neighbourhood comparisons revealed alternative structures of the nitrate assimilation operon </span><i>nirA</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">.</span>","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Draft Genome Sequences of <i>Synechococcus</i> sp. strains CCAP1479/9, CCAP1479/10, CCAP1479/13, CCY0621, and CCY9618: Five Freshwater <i>Syn/Pro</i> Clade Picocyanobacteria","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"<span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">Freshwater; Picocyanobacteria; </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">; Genome; </span><i>Synechococcus sp. CCAP1479/9</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">; </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCAP1479/10; </span><i>Synechococcus sp. CCAP1479/13</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\">; </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCY0621; </span><i>Synechococcus</i><span style=\"background-color:rgb(255,255,255);color:rgb(33,33,33);\"> sp. CCY9618</span>","OtherDescriptors":null,"Notes":null,"AnaPub":2023,"MonPub":null,"DateUpdate":"2024-01-22","DateCreate":"2024-01-22","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":1,"DOI":"10.7150/jgen.81013"},"refs":null,"anarec":{"AnaID":381204,"PubliDate":2023,"Pagination":"26-36","XtraPublOfAnaID":null,"ISBN":null,"Volume":"11","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":334750,"SerRR":"Journal of Genomics. Ivyspring International Publisher: Wyoming, NSW.  e-ISSN 1839-9940","StandardTitleSer":"Journal of Genomics","ISSN":null,"AbbrevSer":null,"StandardTitleMon":null,"StartPage":26,"Pages":11,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Druce","Firstname":"Elliot","Initials":"E.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":378945,"AutID":551215,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Grego","Firstname":"Michele","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":378945,"AutID":336010,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"MMB","InsFSN":"Koninklijk Nederlands Instituut voor Onderzoek der Zee; Marine Microbiology and Biogeochemistry","ORCID":null,"PersID":24470,"InsID":13655},{"AutName":"Bolhuis","Firstname":"Henk","Initials":"H.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":378945,"AutID":236407,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":"MMB","InsFSN":"Koninklijk Nederlands Instituut voor Onderzoek der Zee; Marine Microbiology and Biogeochemistry","ORCID":"0000-0002-4772-1898","PersID":13475,"InsID":13655},{"AutName":"Johnes","Firstname":"Penny","Initials":"P.J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":378945,"AutID":551218,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Sánchez-Baracaldo","Firstname":"Patricia","Initials":"P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":378945,"AutID":204298,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":378945,"BEntPrivate":null,"availability":[{"BInstID":395550,"LibID":2779,"BRefID":381204,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"395550","RFID":null,"PaidValue":null,"Medium":"Server","Description":null,"Acronym":null,"Library":"NIOZ","DutchTerm":null,"URL":null,"ClassifID":260,"Classification":"NIOZ Open Repository","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":null,"LoggedInReq":null,"Disclaimer":"Disclaimer_NIOZ","DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":397,"FileFormID":6,"LendableFlag":null,"PublicFlag":1,"orderLib":"NIOZ","Notes":null,"AccConID":21,"AccessConstraint":"Attribution (CC BY)","LicURL":"https://creativecommons.org/licenses/by/4.0/"}],"litstyles":null,"thespers":null,"arch2discl":805,"SERpubls":[{"PublName":"Ivyspring International Publisher","City":"Wyoming, NSW"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":null,"conf":null,"proj":null,"Physdatasets":null,"spcols":{"805":{"SpName":"Koninklijk Nederlands Instituut voor Onderzoek der Zee","SpColID":805,"ParSpColID":null,"TopParID":null,"ShortName":"NIOZ","URLLocation":"https://www.vliz.be/imis/nioz/imis.php?refid=","LibID":2779,"OpenRepoFlag":1,"SpTypID":1,"TopParIDNotWebsite":null,"SpColPath":"NIOZ"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":378945,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":378945,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.7150/jgen.81013","externalID":"10.7150/jgen.81013","URLTypeCode":"DOI","URLID":122130,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"daan.van.loon@nioz.nl","newSesDate":{"date":"2024-01-22 14:52:30.877000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"daan.van.loon@nioz.nl","updSesDate":{"date":"2024-01-22 14:52:30.877000","timezone_type":3,"timezone":"Europe/Brussels"}}}