{"refrec":{"BRefID":390970,"RR":"<b>Martin, A.; Rosset, N.; Blettery, J.; Gousseau, Y.</b> (2023). Using deep-learning for automatic identification of images of marine benthic macro-invertebrate bycatch: a proof of concept. <i>Cybium 47(3)</i>: 335-341. <a href=\"https://dx.doi.org/10.26028/cybium/2023-021\" target=\"_blank\">https://dx.doi.org/10.26028/cybium/2023-021</a>","BEntID":388717,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Cybium 47(3)</i>: 335-341. <a href=\"https://dx.doi.org/10.26028/cybium/2023-021\" target=\"_blank\">https://dx.doi.org/10.26028/cybium/2023-021</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Martin, A.; Rosset, N.; Blettery, J.; Gousseau, Y.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Martin, A. <i>et al.</i>","Englishabstract":"We applied a deep-learning approach in order to develop a neural network able to detect and identify macro-invertebrate organisms within images of benthos bycatch collected in the Southern Ocean. We used the Faster RCNN architecture and fine-tuning approach. To perform the transfer-learning, we used an annotated dataset of 59,756 images of organisms identified within 1,845 images of lots, covering eleven taxa: Echinodermata, Asteroidea, Arthropoda, Annelida, Chordata, Hemichordata, Cnidaria, Porifera, Bryozoa, Brachiopoda and Mollusca. The resulting network, not yet efficient enough to obtain precise identifications, is able to provide detection and classification of organisms with a good level of accuracy considering the limited quality of the images used for training. We present this study as a proof of concept for teams involved in the management of collections of macro-invertebrate images.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Using deep-learning for automatic identification of images of marine benthic macro-invertebrate bycatch: a proof of concept","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2024-12-10 01:33:17.368041","timezone_type":1,"timezone":"+01:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"Annotated image collection - Automatic identification - Benthos - Bycatch - Deep-learning - Fisheries - Images - Kerguelen - Macro-invertebrates - Southern Ocean","OtherDescriptors":null,"Notes":null,"AnaPub":2023,"MonPub":null,"DateUpdate":"2024-03-14","DateCreate":"2024-03-14","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":0,"DOI":"10.26028/cybium/2023-021"},"refs":null,"anarec":{"AnaID":390970,"PubliDate":2023,"Pagination":"335-341","XtraPublOfAnaID":null,"ISBN":null,"Volume":"47","Issue":"3","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":42601,"SerRR":"Cybium. Muséum national d'Histoire naturelle: Paris.  ISSN 0399-0974; e-ISSN 2101-0315","StandardTitleSer":"Cybium","ISSN":"0399-0974","AbbrevSer":"Cybium","StandardTitleMon":null,"StartPage":335,"Pages":7,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Martin","Firstname":"Alexis","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":388717,"AutID":273101,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Rosset","Firstname":"Nicolas","Initials":"N.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":388717,"AutID":557267,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Blettery","Firstname":"Jonathan","Initials":"J.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":388717,"AutID":557266,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Gousseau","Firstname":"Yann","Initials":"Y.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":388717,"AutID":557268,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":396979,"LibID":36,"BRefID":390970,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":null,"ShelfLocCode":"396979","RFID":null,"PaidValue":null,"Medium":"Server","Description":"Interne VLIZ documenten","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Non-open access","URL":null,"ClassifID":228,"Classification":"Non-open access","ReqLink":1,"ClassifTypID":3,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":1,"InternalReq":1,"LoggedInReq":1,"Disclaimer":"Disclaimer_VLIZ_Intern","DutchDisclaimer":"<p>Deze publicatie is enkel beschikbaar voor persoonlijk gebruik binnen de Innovocean site <br />en mag op geen enkele manier verder worden verspreid.</p>","FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Muséum national d'Histoire naturelle","City":"Paris"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":null,"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":388717,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":388717,"AbstractFlag":0,"LangID":22,"LangCode":"fr","Lang":"French","DutchTerm":"Frans","LangCodeExtended":"fre"},{"BEntID":388717,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.26028/cybium/2023-021","externalID":"10.26028/cybium/2023-021","URLTypeCode":"DOI","URLID":129013,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":null,"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":null,"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Bouchti, Zohra, Z.","newSesDate":{"date":"2024-03-14 08:10:05.400000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Bouchti, Zohra, Z.","updSesDate":{"date":"2024-03-14 08:10:05.400000","timezone_type":3,"timezone":"Europe/Brussels"}}}
