{"refrec":{"BRefID":393894,"RR":"<b>Schmid, S.; Bachmann Salvy, M.; Garcia Jimenez, A.; Bertrand, J.A.M.; Cortesi, F.; Heim, S.; Huyghe, F.; Litsios, G.; Marcionetti, A.; O’Donnell, J.L.; Riginos, C.; Tettamanti, V.; Salamin, N.</b> (2024). Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish. <i>Mol. Ecol. 33(14)</i>: e17436. <a href=\"https://dx.doi.org/10.1111/mec.17436\" target=\"_blank\">https://dx.doi.org/10.1111/mec.17436</a>","BEntID":391683,"PublicFlag":1,"CheckedFlag":1,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>Mol. Ecol. 33(14)</i>: e17436. <a href=\"https://dx.doi.org/10.1111/mec.17436\" target=\"_blank\">https://dx.doi.org/10.1111/mec.17436</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Schmid, S.; Bachmann Salvy, M.; Garcia Jimenez, A.; Bertrand, J.A.M.; Cortesi, F.; Heim, S.; Huyghe, F.; Litsios, G.; Marcionetti, A.; O’Donnell, J.L.; Riginos, C.; Tettamanti, V.; Salamin, N.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Schmid, S. <i>et al.</i>","Englishabstract":"Even seemingly homogeneous on the surface, the oceans display high environmental heterogeneity across space and time. Indeed, different soft barriers structure the marine environment, which offers an appealing opportunity to study various evolutionary processes such as population differentiation and speciation. Here, we focus on <i>Amphiprion clarkii</i> (Actinopterygii; Perciformes), the most widespread of clownfishes that exhibits the highest colour polymorphism. Clownfishes can only disperse during a short pelagic larval phase before their sedentary adult lifestyle, which might limit connectivity among populations, thus facilitating speciation events. Consequently, the taxonomic status of <i>A</i>. <i>clarkii</i> has been under debate. We used whole-genome resequencing data of 67 <i>A</i>. <i>clarkii</i> specimens spread across the Indian and Pacific Oceans to characterize the species' population structure, demographic history and colour polymorphism. We found that <i>A</i>. <i>clarkii</i> spread from the Indo-Pacific Ocean to the Pacific and Indian Oceans following a stepping-stone dispersal and that gene flow was pervasive throughout its demographic history. Interestingly, colour patterns differed noticeably among the Indonesian populations and the two populations at the extreme of the sampling distribution (i.e. Maldives and New Caledonia), which exhibited more comparable colour patterns despite their geographic and genetic distances. Our study emphasizes how whole-genome studies can uncover the intricate evolutionary past of wide-ranging species with diverse phenotypes, shedding light on the complex nature of the species concept paradigm.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Gene flow throughout the evolutionary history of a colour polymorphic and generalist clownfish","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-06-07 01:32:00.182974","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"genomics/proteomics, population genetics-empirical, phylogeography","OtherDescriptors":null,"Notes":null,"AnaPub":2024,"MonPub":null,"DateUpdate":"2025-09-18","DateCreate":"2024-08-05","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":"WOS:001246014700001","VABBcode":null,"OpenAcc":1,"DOI":"10.1111/mec.17436"},"refs":null,"anarec":{"AnaID":393894,"PubliDate":2024,"Pagination":"e17436","XtraPublOfAnaID":null,"ISBN":null,"Volume":"33","Issue":"14","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":45425,"SerRR":"Molecular Ecology. Blackwell: Oxford.  ISSN 0962-1083; e-ISSN 1365-294X","StandardTitleSer":"Molecular Ecology","ISSN":"0962-1083","AbbrevSer":"Mol. Ecol.","StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Schmid","Firstname":"Sarah","Initials":"S.","Affiliation":"Department of Computational Biology University of Lausanne","Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571099,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":"0000-0002-4328-685X","PersID":38300,"InsID":null},{"AutName":"Bachmann Salvy","Firstname":"Marianne","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571100,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Garcia Jimenez","Firstname":"Alberto","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571101,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Bertrand","Firstname":"Joris","Initials":"J.A.M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571102,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Cortesi","Firstname":"Fabio","Initials":"F.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":287357,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Heim","Firstname":"Sara","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571104,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Huyghe","Firstname":"Filip","Initials":"F.","Affiliation":"Marine Biology Laboratory, Department of Ecology and Biodiversity, Vrije Universiteit Brussel ","Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571105,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":"Vrije Universiteit Brussel; Faculteit Wetenschappen & Bio-ingenieurswetenschappen; Vakgroep Biologie; Ecology and Biodiversity; Onderzoeksgroep Mariene Biologie","ORCID":null,"PersID":27728,"InsID":11956},{"AutName":"Litsios","Firstname":"Glenn","Initials":"G.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":466014,"OrderNr":8,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Marcionetti","Firstname":"Anna","Initials":"A.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":455826,"OrderNr":9,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"O’Donnell","Firstname":"James","Initials":"J.L.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":414142,"OrderNr":10,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Riginos","Firstname":"Cynthia","Initials":"C.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":166425,"OrderNr":11,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Tettamanti","Firstname":"Valerio","Initials":"V.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":571110,"OrderNr":12,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Salamin","Firstname":"Nicolas","Initials":"N.","Affiliation":"Swiss Inst Bioinformat, CH-1015 Lausanne, Switzerland.","Discriminator":null,"CorporateFlag":0,"BEntID":391683,"AutID":208521,"OrderNr":13,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":408489,"LibID":36,"BRefID":393894,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"408489","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":1,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"Blackwell","City":"Oxford"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Fish","ThestID":81030,"Acronym":"CSA","ThesTermPath":"Fish"}],"thestermsASFA":[{"ThesaurusTerm":"Fish"}],"taxtermsASFA":[{"TaxTerm":"Amphiprion clarkii"}],"geotermsASFA":null,"collections":[{"Collection":"OMA - Open Marien Archief","ShortName":"OMA"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"222":{"SpName":"BMB - Belgische Mariene Bibliografie","SpColID":222,"ParSpColID":null,"TopParID":null,"ShortName":"BMB","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"BMB"},"221":{"SpName":"OMA - Open Marien Archief","SpColID":221,"ParSpColID":null,"TopParID":null,"ShortName":"OMA","URLLocation":null,"LibID":36,"OpenRepoFlag":1,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OMA"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":391683,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":391683,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.1111/mec.17436","externalID":"10.1111/mec.17436","URLTypeCode":"DOI","URLID":133896,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Fish","ThestID":81030,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"}],"taxterms":[{"TaxTerm":"Amphiprion clarkii [yellowtail clownfish]","AphiaID":212783,"TaxtID":24598}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Fish","DutchTerm":"Vis","ThestID":81030,"Acronym":"CSA","ThesTypID":2,"ThesType":"CSA Technology Research Database Master Thesaurus"}],"taxtermsFRIS":[{"TaxTerm":"Amphiprion clarkii","DutchTerm":null,"AphiaID":212783,"TaxtID":24598}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2024-08-05 09:19:41.190000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Lyssens, Liesbeth, L.","updSesDate":{"date":"2025-09-18 16:36:03.040000","timezone_type":3,"timezone":"Europe/Brussels"}}}