Document of bibliographic reference 404493

BibliographicReference record

Type

Bibliographic resource

Type of document

Journal article

BibLvlCode

AS

Title

Advancements in DNA metabarcoding protocols for monitoring zooplankton in marine and brackish environments

Abstract

Over the past century, numerous studies have proposed various organisms for the biomon?itoring of aquatic systems, but only recently has zooplankton emerged as a promising indicator of water quality. The traditional identification methods, however, can be inefficient in the context of monitoring efforts, as they are often time consuming and costly. DNA metabarcoding offers a powerful alternative, providing a more efficient and reliable approach to monitor zooplankton com?munities. In this review, we assess the current state-of-the-art methodologies used to evaluate marine and brackish zooplankton communities through the DNA metabarcoding workflow. While several emerging approaches have been reported, no standardization has been achieved so far. The DNA extraction step has gained the most consensus, with the widespread use of commercial kits (DNeasy Blood & Tissue kit employed in ca. 25% of the studies), though there is still a significant variation in kit selection. Additionally, 18S and COI were the main molecular markers employed (ca. 61% and 54%, respectively) though the target region varied in the former. Moreover, many methodologies, particularly those used for processing zooplankton samples, lack practical validation. Some studies also fail to provide sufficient detail in their methodology descriptions hindering reproducibility. Overall, DNA metabarcoding shows great potential for the efficient monitoring of zooplankton communities, but further effort is needed to establish standardized practices and optimize the current approaches across the entire methodological pipeline.

Bibliographic citation

Moutinho, J.; Costa, F.O.; Duarte, S. (2024). Advancements in DNA metabarcoding protocols for monitoring zooplankton in marine and brackish environments. J. Mar. Sci. Eng. 12(11): 2093. https://dx.doi.org/10.3390/jmse12112093

Topic

Marine

Brakish water

Is peer reviewed

true

Access rights

open access

Is accessible for free

true