{"refrec":{"BRefID":405235,"RR":"<b>Simões, M.; Costa, C.; da Luz Calado, M.; Vasco-Rodrigues, N.; Campos, M.J.; Leandro, S.M.; Antunes, A.</b> (2025). Unveiling the UNESCO Biosphere Reserve of the Berlengas Archipelago in Portugal as a hotspot of fish species using eDNA metabarcoding and the collaboration of fishing crews. <i>J. Mar. Sci. Eng. 13(1)</i>: 60. <a href=\"https://dx.doi.org/10.3390/jmse13010060\" target=\"_blank\">https://dx.doi.org/10.3390/jmse13010060</a>","BEntID":403030,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>J. Mar. Sci. Eng. 13(1)</i>: 60. <a href=\"https://dx.doi.org/10.3390/jmse13010060\" target=\"_blank\">https://dx.doi.org/10.3390/jmse13010060</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":1,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Simões, M.; Costa, C.; da Luz Calado, M.; Vasco-Rodrigues, N.; Campos, M.J.; Leandro, S.M.; Antunes, A.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Simões, M. <i>et al.</i>","Englishabstract":"Managing fishery resources is crucial to ensure the marine environment continues to provide diverse goods and services. To overcome difficulties of classical methods used for fish stock management, molecular tools have shown potential to address this issue assessing both targeted and non-targeted species. This study aims to evaluate the spatiotemporal diversity of fish using 12S rRNA gene eDNA metabarcoding sequencing in the Berlengas archipelago and compare two seawater eDNA sampling sources: samples collected by fishermen during their activities and those collected by our research team. The results indicated that autumn presented the highest diversity and that the area around Berlenga Island was the richest area, increasing biodiversity across the region. Fisher-collected samples were generally less diverse than those by the research team but detected species typical of deeper and open-ocean habitats, validating this sampling method. Our study also highlighted eDNA’s role in monitoring fish species by detecting unexpected species for the region, such as Atlantic salmon (Salmo salar) and Atlantic cod (Gadus morhua), while cautioning against false positives like orange clownfish (Amphiprion percula) and blue tilapia (Oreochromis aureus). Future optimisation of our eDNA sampling methodology could better refine marine ecosystem dynamics around the UNESCO Biosphere Reserve of the Berlengas Archipelago, Portugal.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Unveiling the UNESCO Biosphere Reserve of the Berlengas Archipelago in Portugal as a hotspot of fish species using eDNA metabarcoding and the collaboration of fishing crews","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2026-07-04 01:32:32.126088","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":"environmental DNA; fish diversity; Northeast Atlantic; Portugal: ","OtherDescriptors":null,"Notes":null,"AnaPub":2025,"MonPub":null,"DateUpdate":"2025-01-09","DateCreate":"2025-01-09","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":1,"DOI":"10.3390/jmse13010060"},"refs":null,"anarec":{"AnaID":405235,"PubliDate":2025,"Pagination":"60","XtraPublOfAnaID":null,"ISBN":null,"Volume":"13","Issue":"1","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":251606,"SerRR":"Journal of Marine Science and Engineering. MDPI: Basel.  ISSN 2077-1312; e-ISSN 2077-1312","StandardTitleSer":"Journal of Marine Science and Engineering","ISSN":"2077-1312","AbbrevSer":"J. Mar. Sci. Eng.","StandardTitleMon":null,"StartPage":60,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Simões","Firstname":"Marco","Initials":"M.","Affiliation":"MARE—Marine and Environmental Sciences Centre/ARNET—Aquatic Research Network Associate Laboratory, Polytechnic Institute of Leiria, 2520-630 Peniche, Portugal","Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":579053,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Costa","Firstname":"Cátia","Initials":"C.","Affiliation":"MARE—Marine and Environmental Sciences Centre/ARNET—Aquatic Research Network Associate Laboratory, Polytechnic Institute of Leiria, 2520-630 Peniche, Portugal","Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":579055,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"da Luz Calado","Firstname":"Maria","Initials":"M.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":153286,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Vasco-Rodrigues","Firstname":"Nuno","Initials":"N.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":229481,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Campos","Firstname":"Maria Jorge","Initials":"M.J.","Affiliation":"MARE—Marine and Environmental Sciences Centre/ARNET—Aquatic Research Network Associate Laboratory, School of Tourism and Maritime Technology, Polytechnic Institute of Leiria, 2520-630 Peniche, Portugal","Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":579582,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Leandro","Firstname":"Sérgio Miguel","Initials":"S.M.","Affiliation":"MARE—Marine and Environmental Sciences Centre/ARNET—Aquatic Research Network Associate Laboratory, School of Tourism and Maritime Technology, Polytechnic Institute of Leiria, 2520–614 Peniche, Portugal","Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":579060,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Antunes","Firstname":"Agostinho","Initials":"A.","Affiliation":"Univ Porto, Ctr Interdisciplinar Invest Marinha & Ambiental, CIIMAR, CIMAR, Ave Gen Norton Matos S-N, P-4450208 Porto, Portugal.","Discriminator":null,"CorporateFlag":0,"BEntID":403030,"AutID":554733,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":411139,"LibID":36,"BRefID":405235,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"411139","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":null,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"MDPI","City":"Basel"}],"MONpubls":null,"pictures":[],"thestermsPath":[{"ThesaurusTerm":"Genetics","ThestID":3596,"Acronym":"ASFA","ThesTermPath":"Biology > Genetics"},{"ThesaurusTerm":"Fisheries management","ThestID":3220,"Acronym":"ASFA","ThesTermPath":"Fisheries management"},{"ThesaurusTerm":"Portugal","ThestID":186468,"Acronym":"ASFA_GEOT","ThesTermPath":"Portugal"}],"thestermsASFA":[{"ThesaurusTerm":"Genetics"},{"ThesaurusTerm":"Portugal"}],"taxtermsASFA":[{"TaxTerm":"Amphiprion percula (Lacépède, 1802)"},{"TaxTerm":"Gadus morhua"},{"TaxTerm":"Oreochromis aureus"},{"TaxTerm":"Salmo salar (Linné 1758)"}],"geotermsASFA":[{"GeoTerm":"Atlantic"},{"GeoTerm":"Portuguese Exclusive Economic Zone"}],"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"880":{"SpName":"OBIS-cited publications","SpColID":880,"ParSpColID":null,"TopParID":null,"ShortName":"OBIS-cited publications","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"OBIS-cited publications"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":403030,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":403030,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.3390/jmse13010060","externalID":"10.3390/jmse13010060","URLTypeCode":"DOI","URLID":139617,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":[{"ThesaurusTerm":"Fisheries management","ThestID":3220,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Genetics","ThestID":3596,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Portugal","ThestID":186468,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"}],"taxterms":[{"TaxTerm":"Amphiprion percula (Lacépède, 1802)","AphiaID":278402,"TaxtID":23457},{"TaxTerm":"Gadus morhua","AphiaID":126436,"TaxtID":25119},{"TaxTerm":"Oreochromis aureus","AphiaID":279196,"TaxtID":56419},{"TaxTerm":"Salmo salar (Linné 1758)","AphiaID":127186,"TaxtID":24738}],"geoterms":[{"GeoTerm":"Atlantic","GeoObjectID":18902,"GeotID":7105},{"GeoTerm":"Portuguese Exclusive Economic Zone","GeoObjectID":5688,"GeotID":437}],"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":[{"ThesaurusTerm":"Fisheries management","DutchTerm":"Visserij management","ThestID":3220,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Genetics","DutchTerm":"Genetica","ThestID":3596,"Acronym":"ASFA","ThesTypID":1,"ThesType":"ASFA Thesaurus List"},{"ThesaurusTerm":"Portugal","DutchTerm":null,"ThestID":186468,"Acronym":"ASFA_GEOT","ThesTypID":34,"ThesType":"ASFA Geoterms"}],"taxtermsFRIS":[{"TaxTerm":"Amphiprion percula (Lacépède, 1802)","DutchTerm":null,"AphiaID":278402,"TaxtID":23457},{"TaxTerm":"Gadus morhua","DutchTerm":"Kabeljauw","AphiaID":126436,"TaxtID":25119},{"TaxTerm":"Oreochromis aureus","DutchTerm":null,"AphiaID":279196,"TaxtID":56419},{"TaxTerm":"Salmo salar (Linné 1758)","DutchTerm":null,"AphiaID":127186,"TaxtID":24738}],"geotermsFRIS":[{"GeoTerm":"Atlantic","DutchTerm":null},{"GeoTerm":"Portuguese Exclusive Economic Zone","DutchTerm":"Portugal"}],"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2025-01-09 08:29:26.340000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Chisala, Chilekwa, C.","updSesDate":{"date":"2025-01-09 08:29:26.340000","timezone_type":3,"timezone":"Europe/Brussels"}}}
