{"refrec":{"BRefID":405933,"RR":"<b>Lopes, E.P.; Santos, S.; Xavier, R.; Santos, J.L.; Cabezas, M.P.; Sequeira, F.; Santos, A.M.</b> (2025). Genetic analysis of <i>Pinna rudis</i> L 1758 (Mollusca, Bivalvia, Pinnidae) in the northwest Cabo Verde Islands (Central-east Atlantic). <i>PeerJ 13</i>: e18328. <a href=\"https://dx.doi.org/10.7717/peerj.18328\" target=\"_blank\">https://dx.doi.org/10.7717/peerj.18328</a>","BEntID":403728,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":1,"RefStringPartII":". <i>PeerJ 13</i>: e18328. <a href=\"https://dx.doi.org/10.7717/peerj.18328\" target=\"_blank\">https://dx.doi.org/10.7717/peerj.18328</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Lopes, E.P.; Santos, S.; Xavier, R.; Santos, J.L.; Cabezas, M.P.; Sequeira, F.; Santos, A.M.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Lopes, E.P. <i>et al.</i>","Englishabstract":"The rough pen shell <i>Pinna rudis</i> Linnaeus, 1758 (family Pinnidae) is a mollusc with an Atlantic–Mediterranean distribution, typically inhabiting coarse sandy substrates. Habitat degradation is considered the primary cause of population decline, leading to the designation ‘Vulnerable’ in certain regions. In this study, we conducted a genetic analysis of populations of <i>P. rudis</i> from Cabo Verde and compared them with populations from the Mediterranean and Macaronesia. We based our analysis on two mitochondrial DNA markers, cytochrome oxidase I (COI) and 16S rRNA, and one nuclear marker, 28S rRNA. The results showed a strong genetic structuring among Macaronesia populations, with each island tending to have unique or exclusive haplotypes, though some sharing occurred between islands. We found significant genetic divergence between the population from Cabo Verde and the other sampled population, suggesting that <i>P. rudis</i> is not monotypic, but may include several cryptic species. Bayesian and maximum-likelihood phylogenetic analysis, including all Pinnidae species, indicated that <i>P. rudis</i> from Gorée Island (Senegal) and Baía das Gatas (São Vicente Island) might be undergoing speciation. The high genetic structure found for <i>P. rudis</i> could be influenced by hydrodynamic barriers, local currents and hydrographic isolation, in association with the short larval duration (planktotrophic) reported for this species. Altogether, our findings highlight significant genetic divergence in <i>P. rudis</i> populations, possibly supporting speciation events in the Cabo Verde archipelago among widely distributed taxonomic groups.","AbstractOtherLang":null,"BibLvlCode":"AS","StandardTitle":"Genetic analysis of <i>Pinna rudis</i> L 1758 (Mollusca, Bivalvia, Pinnidae) in the northwest Cabo Verde Islands (Central-east Atlantic)","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2025-03-11 01:33:21.907208","timezone_type":1,"timezone":"+01:00"},"AuthorKeywords":"Cabo Verde, Genetic analysis, mtDNA, nDNA, Macaronesia","OtherDescriptors":null,"Notes":null,"AnaPub":2025,"MonPub":null,"DateUpdate":"2025-03-04","DateCreate":"2025-03-04","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":1,"DOI":"10.7717/peerj.18328"},"refs":null,"anarec":{"AnaID":405933,"PubliDate":2025,"Pagination":"e18328","XtraPublOfAnaID":null,"ISBN":null,"Volume":"13","Issue":null,"BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":242055,"SerRR":"PeerJ. PeerJ: Corte Madera & London.  ISSN 2167-8359; e-ISSN 2167-8359","StandardTitleSer":"PeerJ","ISSN":"2167-8359","AbbrevSer":"PeerJ","StandardTitleMon":null,"StartPage":null,"Pages":null,"ToPubliDate":null,"BRefBibLvlCode":"S","SerNotes":null},"monrec":null,"serrec":null,"relations":null,"relationsRev":null,"addrec":null,"othpubs":null,"ownerships":null,"authors":[{"AutName":"Lopes","Firstname":"Evandro","Initials":"E.P.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":524674,"OrderNr":1,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Santos","Firstname":"Sarah","Initials":"S.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":582183,"OrderNr":2,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Xavier","Firstname":"Raquel","Initials":"R.","Affiliation":"Ctr Invest Biodiversidade & Recursos Genet, CIBIO, P-4485661 Vairao, Portugal.","Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":296839,"OrderNr":3,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Santos","Firstname":"Joana","Initials":"J.L.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":582185,"OrderNr":4,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Cabezas","Firstname":"M. Pilar","Initials":"M.P.","Affiliation":null,"Discriminator":null,"CorporateFlag":1,"BEntID":403728,"AutID":124519,"OrderNr":5,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Sequeira","Firstname":"Fernando","Initials":"F.","Affiliation":null,"Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":582187,"OrderNr":6,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null},{"AutName":"Santos","Firstname":"António","Initials":"A.M.","Affiliation":"Univ Porto, Fac Ciencias, Dept Biol, P-4169007 Oporto, Portugal.","Discriminator":null,"CorporateFlag":0,"BEntID":403728,"AutID":296849,"OrderNr":7,"DegrID":null,"EditorFlag":0,"CorrespFlag":0,"IllustratorFlag":0,"ReviserFlag":0,"TranslatorFlag":0,"InsAcronym":null,"InsFSN":null,"ORCID":null,"PersID":null,"InsID":null}],"mapdetails":null,"datasets":null,"monographs":null,"monparts":null,"serparts":null,"BEntOpen":null,"BEntPrivate":null,"availability":[{"BInstID":411837,"LibID":36,"BRefID":405933,"EmbargoDate":null,"FullEmbargoDate":null,"PhysMedID":16,"hasOCRd":1,"ShelfLocCode":"411837","RFID":null,"PaidValue":null,"Medium":"Server","Description":"VLIZ Open Access","Acronym":"VLIZ","Library":"Vlaams Instituut voor de Zee","DutchTerm":"Open access","URL":null,"ClassifID":53,"Classification":"Open access","ReqLink":null,"ClassifTypID":1,"URLLocation":"https://www.vliz.be/imisdocs/publications/","SubDir":null,"InternalReq":0,"LoggedInReq":0,"Disclaimer":null,"DutchDisclaimer":null,"FileFormat":".pdf","FileDescr":"pdf","InsPub":1,"InsID":36,"FileFormID":6,"LendableFlag":null,"PublicFlag":1,"orderLib":"A","Notes":null,"AccConID":null,"AccessConstraint":null,"LicURL":null}],"litstyles":null,"thespers":null,"arch2discl":null,"SERpubls":[{"PublName":"PeerJ","City":"Corte Madera & London"}],"MONpubls":null,"pictures":[],"thestermsPath":null,"thestermsASFA":null,"taxtermsASFA":[{"TaxTerm":"Pinna rudis"}],"geotermsASFA":null,"collections":[{"Collection":"VLIZ Acknowledged Publications","ShortName":"VLIZ ackn"}],"conf":null,"proj":null,"Physdatasets":null,"spcols":{"941":{"SpName":"LifeWatch Species Information Backbone","SpColID":941,"ParSpColID":39,"TopParID":39,"ShortName":"LifeWatch Species Information Backbone","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone"},"39":{"SpName":"VLIZ Acknowledged Publications","SpColID":39,"ParSpColID":null,"TopParID":null,"ShortName":"VLIZ ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"VLIZ ackn"},"507":{"SpName":"World Register of Marine Species","SpColID":507,"ParSpColID":null,"TopParID":null,"ShortName":"WoRMS website","URLLocation":null,"LibID":null,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":null,"SpColPath":"WoRMS website"},"915":{"SpName":"World Register of Marine Species (WoRMS) acknowledged","SpColID":915,"ParSpColID":941,"TopParID":39,"ShortName":"WoRMS ackn","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn"},"947":{"SpName":"WoRMS ackn - direct reference","SpColID":947,"ParSpColID":915,"TopParID":39,"ShortName":"WoRMS ackn - direct","URLLocation":null,"LibID":36,"OpenRepoFlag":null,"SpTypID":null,"TopParIDNotWebsite":39,"SpColPath":"VLIZ ackn/LifeWatch Species Information Backbone/WoRMS ackn/WoRMS ackn - direct"}},"doi":null,"publs":null,"serparttypes":null,"monauthors":null,"MParts":null,"SParts":null,"hLibs":null,"langs":[{"BEntID":403728,"AbstractFlag":0,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"},{"BEntID":403728,"AbstractFlag":1,"LangID":15,"LangCode":"en","Lang":"English","DutchTerm":"Engels","LangCodeExtended":"eng"}],"urls":[{"URL":"https://dx.doi.org/10.7717/peerj.18328","externalID":"10.7717/peerj.18328","URLTypeCode":"DOI","URLID":140861,"URLTypID":13,"URLType":"DOI","URLPrefix":"http://dx.doi.org/"}],"thesterms":null,"taxterms":[{"TaxTerm":"Pinna rudis","AphiaID":140781,"TaxtID":47027}],"geoterms":null,"othterms":null,"asfacodes":null,"asfa2codes":null,"thestermsFRIS":null,"taxtermsFRIS":[{"TaxTerm":"Pinna rudis","DutchTerm":null,"AphiaID":140781,"TaxtID":47027}],"geotermsFRIS":null,"othtermsFRIS":null,"resmessage":"","complete":1,"sessions":{"newSesName":"Chisala, Chilekwa, C.","newSesDate":{"date":"2025-03-04 07:44:57.330000","timezone_type":3,"timezone":"Europe/Brussels"},"updSesName":"Chisala, Chilekwa, C.","updSesDate":{"date":"2025-03-04 07:44:57.330000","timezone_type":3,"timezone":"Europe/Brussels"}}}