{"refrec":{"BRefID":410325,"RR":"<b>Chen, J.; Sun, Y.; Li, J.; Xu, K.; Ye, Y.</b> (2025). The complete mitochondrial genome of <i>Glyphocrangon regalis</i> (Caridea, Glyphocrangonidae) and the phylogenetic relationships of Caridea. <i>Crustaceana 98(2)</i>: 189-211. <a href=\"https://dx.doi.org/10.1163/15685403-bja10433\" target=\"_blank\">https://dx.doi.org/10.1163/15685403-bja10433</a>","BEntID":408134,"PublicFlag":1,"CheckedFlag":0,"wosflag":1,"vabbflag":0,"RefStringPartII":". <i>Crustaceana 98(2)</i>: 189-211. <a href=\"https://dx.doi.org/10.1163/15685403-bja10433\" target=\"_blank\">https://dx.doi.org/10.1163/15685403-bja10433</a>","DocTypID":8,"DocType":"Journal article","MarineFlag":0,"FreshFlag":0,"BrackishFlag":0,"TerrestrialFlag":0,"Authorstring":"Chen, J.; Sun, Y.; Li, J.; Xu, K.; Ye, Y.","OrigTitleTranslFlag":0,"Authorstringtrunc":"Chen, J. <i>et al.</i>","Englishabstract":"In studying the mitochondrial genome (mitogenome) composition and gene sequences of deep-sea organisms, it is of great importance to understand and explore the molecular mechanisms underlying their adaptation to the deep-sea environment. <i>Glyphocrangon regalis</i> belongs to Caridea, Crangonoidea, and is a typical deep-sea shrimp. In this study, the complete mitogenome of <i>G. regalis</i> was obtained using next-generation sequencing technology. The mitochondrial genes were annotated, and their sequence structures were analysed. The complete mitogenome sequence of <i>G. regalis</i> was 15 918&nbsp;bp in length, with a base composition of A (36.85%), T (36.68%), C (15.53%) and G (9.94%), exhibiting a significant AT bias with an A&nbsp;+ T content of 75.53%. <i>G. regalis</i> encoded a total of 37 genes, including 13 protein-coding genes (PCGs), 22 tRNAs and 2 rRNAs; among them, 14 genes were located on the negative strand, and 23 genes were located on the positive strand, similar to other caridean shrimp mitogenomes. Additionally, a phylogenetic tree was constructed based on the 13 PCGs of the mitogenomes of 95 species from 12 families within Caridea, supporting the monophyly of various families within Caridea and revealing that <i>G. regalis</i> and species of Pandalidae were the most closely related. This study provides insights into the complete mitogenome of <i>G. regalis</i>, elucidating its genomic characteristics and structural functions. It clarifies the evolutionary status of <i>G. regalis</i> and explores the evolutionary patterns of various families within Caridea through phylogenetic tree construction, thereby providing more references for the study of Caridea systematics.","AbstractOtherLang":"Lorsqu’on étudie la composition du génome mitochondrial (mitogénome) et les séquences de gènes des organismes d’eaux profondes, il est important de comprendre et d’explorer les mécanismes moléculaires qui sous-tendent leur adaptation à l’environnement profond. <i>Glyphocrangon regalis</i> est une crevette profonde typique qui appartient aux Caridea Crangonoidea. Dans cette étude, le mitogénome complet de <i>G. regalis</i> a été obtenu en utilisant la technologie de séquençage de nouvelle génération. Les gènes mitochondriaux ont été annotés, et leurs structures de séquence ont été analysées. La séquence complète du mitogénome de <i>G. regalis</i> avait une longueur de 15,918 bp, avec une composition de base de A (36,85%), T (36,68%), C (15,53%) et G (9,94%), présentant un biais AT significatif avec un contenu A+T de 75,53%. <i>G. regalis</i> codait un total de 37 gènes, incluant 13 gènes codant pour des protéines (PCGs), 22 tRNAs et 2 rRNAs ; parmi eux, 14 gènes étaient situés sur le brin négatif, et 23 sur le brin positif, de façon analogue à d’autres mitogénomes de crevettes Caridea. De plus, un arbre phylogénétique a pu être construit sur la base des 13 PCGs des mitogénomes de 95 espèces appartenant à 12 familles de Caridea, soutenant la monophylie de diverses familles de Caridea et révélant que <i>G. regalis</i> et les espèces de Pandalidae étaient les plus proches apparentées. Cette étude fournit de nouvelles connaissances sur le mitogénome complet de <i>G. regalis</i>, en élucidant ses caractéristiques génomiques et ses fonctions structurelles. Elle clarifie le statut évolutif de <i>G. regalis</i> et explore les schémas évolutifs de diverses familles au sein des Caridea par la construction d’un arbre phylogénétique, apportant ainsi des références supplémentaires pour l’étude de la systématique des Caridea.","BibLvlCode":"AS","StandardTitle":"The complete mitochondrial genome of <i>Glyphocrangon regalis</i> (Caridea, Glyphocrangonidae) and the phylogenetic relationships of Caridea","OrigTitleLangCode":"en","OrigTitleLangCodeExtended":"eng","OrigTitleLangID":15,"DateLastModified":{"date":"2025-08-08 01:33:19.193757","timezone_type":1,"timezone":"+02:00"},"UserAccessRight":null,"UserAccID":null,"AuthorKeywords":null,"OtherDescriptors":null,"Notes":null,"AnaPub":2025,"MonPub":null,"DateUpdate":"2025-08-01","DateCreate":"2025-08-01","SecASFANote":null,"ConfID":null,"PeerRev":1,"VlizCoreFlag":1,"WoScode":null,"VABBcode":null,"OpenAcc":0,"DOI":"10.1163/15685403-bja10433"},"refs":null,"anarec":{"AnaID":410325,"PubliDate":2025,"Pagination":"189-211","XtraPublOfAnaID":null,"ISBN":null,"Volume":"98","Issue":"2","BRefMon":null,"BRefMonRR":null,"BRefXtra":null,"BRefXtraRR":null,"SerBRefID":42595,"SerRR":"Crustaceana. 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