Skip to main content

IMIS

A new integrated search interface will become available in the next phase of marineinfo.org.
For the time being, please use IMIS to search available data

 

[ report an error in this record ] Print this page

DNA metabarcoding of the prey and microbiome of museum specimen Antarctic trematomid fishes
Citation
Sweetlove M (2020): DNA metabarcoding of the prey and microbiome of museum specimen Antarctic trematomid fishes. v1.1. SCAR - Microbial Antarctic Resource System. Dataset/Occurrence. https://ipt.biodiversity.aq/resource?r=historic_antarctic_fish_dataset_2019&v=1.3 https://doi.org/10.15468/5axtcc

Access data
Archived data
Availability: Creative Commons License This dataset is licensed under a Creative Commons Attribution 4.0 International License.

Description
In this dataset, stomachs and hindguts were sampled from 225 Trematomus specimens from the Natural History Museum London. Fish specimen were collected between 20 and 100 years ago and fixed in either formaldehyde or ethanol. A 313 bp fragment of the cytochrome c oxidase subunit I (COI) was amplified and sequenced for prey item identification in the stomach and a 450 bp region of the 16S rRNA gene to investigate microbiome composition in the gut system.

Scope
Themes:
Biology > Fish
Keywords:
Marine/Coastal, Prey, Rrna, Stomach content, PS, Southern Ocean, Archaea, Bacteria, Pisces

Geographical coverage
PS, Southern Ocean [Marine Regions]

Temporal coverage
1899 - 2018

Taxonomic coverage
Archaea [WoRMS]
Bacteria [WoRMS]
Pisces [WoRMS]

Parameter
Genetics

Contributor
KU Leuven (KULeuven), more

Related datasets
Published in:
AntOBIS: Antarctic Ocean Biodiversity Information System, more
(Partly) included in:
RAS: Register of Antarctic Species, more

Dataset status: Completed
Data type: Data
Data origin: Data collection
Metadatarecord created: 2020-03-16
Information last updated: 2021-12-06
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy