A new integrated search interface will become available in the next phase of marineinfo.org.
For the time being, please use IMIS to search available data
PPDB: Plankton-specific protein sequence database Citable as data publication Gutierrez, J.; Hablützel, P.I.; Flanders Marine Institute: Belgium; (2022): Plankton-specific protein sequence database. Marine Data Archive. https://doi.org/10.14284/573 Contact: Hablützel, Pascal ; Gutierrez, Jayson Availability:  This dataset is licensed under a Creative Commons Attribution 4.0 International License.Description Plankton-specific protein sequence database suitable for profiling environmental metagenomic/metatranscriptomic samples more Each entry in this fasta file corresponds to a predicted protein sequence for prokaryotic/eukaryotic species. Sequences (2867766) have been taxonomically affiliated (NCBI taxID) and annotated against the UniRef90 database of protein families (clusters). Scope Themes: Biology > Plankton Keywords: Eukaryota, Functional profiling, Metagenomics, Metatranscriptomics, Plankton, Prokaryotae, Protein sequences, World Oceans Geographical coverage World Oceans [Marine Regions] Temporal coverage From 20 July 2022 on [Completed] Not relevant Parameter Total number of sequences in database Contributors Vlaams Instituut voor de Zee (VLIZ), more, data creator Publication Describing this dataset Gutiérrez, J.; Hablützel, P. (2022). A system-level view on the function of natural eukaryotic biomes through taxonomically resolved metabolic pathway profiling. bioRxiv Preprint: 1-23. https://dx.doi.org/10.1101/2022.07.27.501711, more Dataset status: Completed Data type: Data Data origin: Data collection Metadatarecord created: 2022-08-02 Information last updated: 2022-08-22 | ||||
