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Nanopore based eDNA metabarcoding of marine vertebrates in the North Sea Citation Doorenspleet, K.; Jansen, L.; Oosterbroek, S.; Kamermans, P.; Wurz, E.; Murk, A.; Nijland, R.; Marine Animal Ecology; Wageningen Marine Research; Wageningen University and Research Centre: The Netherlands; (2024): Nanopore based eDNA metabarcoding of marine vertebrates in the North Sea. https://marineinfo.org/id/dataset/8601 Contact: Nijland, Reindert Availability: This dataset is licensed under a Creative Commons Attribution 4.0 International License. Description This data is the result of DNA-based water sampling of eDNA in different locations in the North Sea. more Molecular Data generation of marine biodiversity data plays a central role in monitoring and better understanding of North Sea marine ecosystems. By applying DNA-based techniques, this study specifically aims to present a metabarcoding pipeline for Nanopore sequencing and compare a newly designed 2kb primer with commonly used MiFish pimer. eDNA samples were taken in The ray reef aquarium in Dolfinarium , The brokum reef ground in the North sea, at sany bottom, Gmini windpark and around 3 shipwrecks in the North Sea and analysed through metabarcoding with nanopore sequencing and results were compared with morphology and commonly used MiFish primer in order to demonstrate the value of applying this technique. Scope Themes: Biology > Fish, Biology > Invertebrates Keywords: Marine/Coastal, Elasmobranchs, Environmental DNA (eDNA), Fish, Metabarcoding, MinION, ANE, North Sea Geographical coverage ANE, North Sea [Marine Regions] Temporal coverage 1 July 2019 - 31 July 2020 Parameters Depth: Diving computer pH: CTD CTD type: SBE-19 (www.seabird.com); depth profiles of temperature and salinity equipped with a OBS probe for relative turbidity measurements Salinity: CTD CTD type: SBE-19 (www.seabird.com); depth profiles of temperature and salinity equipped with a OBS probe for relative turbidity measurements Temperature: CTD CTD type: SBE-19 (www.seabird.com); depth profiles of temperature and salinity equipped with a OBS probe for relative turbidity measurements Contributors Dataset status: Completed Data type: Data Data origin: Research: field experiment Metadatarecord created: 2024-06-17 Information last updated: 2024-06-27 |