Skip to main content

IMIS

A new integrated search interface will become available in the next phase of marineinfo.org.
For the time being, please use IMIS to search available data

 

[ report an error in this record ] Print this page

Illumina Novaseq dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics
Citable as data publication
Doorenspleet, K.; Mailli, A.A.; van der Hoorn, B.; Beentjes, K.; De Backer, A.; Derycke, S.; Murk, A.; Reiss, H.; Nijland, R.; Wageningen University and Research; Nord University; Naturalis Biodiversity Center; ILVO Marine Research; (2024): Illumina Novaseq dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics. Marine Data Archive. https://doi.org/10.14284/684

Archived data
Availability: Creative Commons License This dataset is licensed under a Creative Commons Attribution 4.0 International License.

Description
The Illumina Novaseq Shotgun metagenomics dataset for the manuscript: Advancing molecular macrobenthos biodiversity monitoring: a comparison between Oxford Nanopore and Illumina based metabarcoding and metagenomics. more

For this manuscript 3 datasets are available that all analyze 12 Bulk samples of macrobenthos from the Belgian North Sea. These samples were used: 1. For NovaSeq shotgun metagenomics 2. For Nanopor e metabarcoding of amplicons from a COI region 3. For Illumina MiSeq metabarcoding of amplicons from the exact same COI region. This is the data for from the Illumina Novaseq run.

Scope
Themes:
Biology > Benthos > Macrobenthos, Biology > Ecology - biodiversity
Keywords:
Marine/Coastal, DNA, Illumina sequencing, Metabarcoding, Metagenomics, Nanopore sequencing, ANE, Belgium

Geographical coverage
ANE, Belgium [Marine Regions]

Temporal coverage
October 2017

Parameters
Count
Species composition
Species richness

Contributors
Wageningen University and Research Centre; Marine Animal Ecology, moredata creator
Nord University; Faculty of Biosciences and Aquaculture, moredata creator
Naturalis Biodiversity Center (NBC), moredata creator
Instituut voor Landbouw-, Visserij- en Voedingsonderzoek (ILVO), moredata creator

Related datasets
Other relations:
Illumina MiSeq dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics, more
Oxford Nanopore dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics, more

Dataset status: Completed
Data type: Data
Data origin: Research: lab experiment
Metadatarecord created: 2024-09-26
Information last updated: 2024-09-26
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy