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Experimental work for the assessment of ocean acidification effects on the sea-urchin Arbacia dufresnii
Citable as data publication
Grandjean, J.; Gonzalez, M.; Gallardo, P.; Dubois, P.; Catarino Ana, I.; Flanders Marine Institute; Université Libre de Bruxelles (ULB); Instituto Antártico Chileno; Universidad de Magallanes; (2025): Experimental work for the assessment of ocean acidification effects on the sea-urchin Arbacia dufresnii. Marine Data Archive. https://doi.org/10.14284/714

Availability: This work is licensed under http://vocab.nerc.ac.uk/collection/L08/current/MO meaning it is under moratorium until 2025-08-24

Description
The goal of this work was to assess the effects of Ocean Acidification (OA) on Arbacia dufresnii, a sub-polar sea urchin species, on spine regeneration, coelomic fluid, mineral content and RNA/DNA ratio. Arbacia dufresnii adults were exposed to three seawater pH treatments: 7.4, 7.7 and 8.0 (control). The dataset includes the endpoints assessment (sea urchin response to exposure treatments) such as coelomic fluid parameters, spine regeneration and RNA/DNA ratio in both body wall and gonads. as well as seawater physicochemical parameters (measured and calculated). more

The present dataset contains results on spine regeneration, coelomic fluid, mineral content and RNA/DNA ratio of a sub-polar sea urchin species Arbacia dufresnii when exposed to three pH treatments: 7.4, 7.7 and 8.0 (control), for 21 days, while fed ad libitum. All the experimental work, from the collection to the exposure took place in Punta Arenas, Chile, between November and December 2008, at the Centro de Cultivos Marinos Bahía Laredo. The goal of this work was to assess the effects of ocean acidification on the sea urchin A. dufresnii, from a sub-polar population (Punta Arenas region, Chile). During the exposure, water physicochemical conditions were measured using a conductivity meter pH/Cond 340 i WTW (USA) for the salinity, and an 827 pH Lab Metrohm meter (Switzerland) with a combined glass electrode (Metrohm 6.0228.010 with temperature sensor) calibrated with pHNIST buffers 4 and 7 (Merck CertiPUR®, Germany) for the temperature and pHNIST. The electromotive force (e.m.f.) was further assessed, to estimate pH in total scale (pHT). The Magnesium and Calcium content of both seawater and the coelomic fluid were measured using Inductively Coupled Plasma Atomic Emission Spectrometer (ICP-AES). Then, the Magnesium content of a pool of 3 spine regenerates coming from single individuals was measured using a flame atomic spectrometry (F-AAS), and the height of the regenerated part using ImageJ 1.33 u (Wayne Rasband, National Institutes of Health, USA). In coelomic fluid, the pHNIST and e.m.f. were measured using a microelectrode (Metrohm 6.0228.100), and the pHT was calculated. Lastly, the RNA/DNA ratio, a proxy of metabolic activity, was assessed in the gonads and body wall using a one dye (ethidium bromide)/one-enzyme (RNase), 96-well microplate fluorometric assay. Finally, all data were processed using the software Rstudio (version 2024.09.1) with appropriate statistical analysis.

Scope
Themes:
Biology > Benthos
Keywords:
Marine/Coastal, Acidification, Echinodermata, Ecotoxicology, Metabolism, Punta Arenas, Arbacia dufresnii (Blainville, 1825)

Geographical coverage
Punta Arenas [Marine Regions]

Temporal coverage
3 November 2008 - 9 September 2009

Taxonomic coverage
Arbacia dufresnii (Blainville, 1825) [WoRMS]

Parameters
Ca2+ concentration Methodology
Coelomic fluid pH Methodology
Magnesium content of regenerated spine Methodology
Mg2+ concentration Methodology
pH Methodology
Salinity Methodology
Spine regenerated height Methodology
Temperature Methodology
Total alkalinity Methodology
Ca2+ concentration: Inductively Coupled Plasma Atomic Emission Spectroscopy
Coelomic fluid pH: Microelectrode
Magnesium content of regenerated spine: Flame atomic spectrometry
Mg2+ concentration: Inductively Coupled Plasma Atomic Emission Spectroscopy
pH: 827 pH Lab Metrohm meter with a combined glass electrode
Salinity: Conductivity meter
Spine regenerated height: ImageJ 1.33 u.
Temperature: 827 pH Lab Metrohm meter with a combined glass electrode
Total alkalinity: Potentiometric titration with HCl 0.1 M using a Titrino 718 STAT Metrohm and calculated using the Gran function

Contributors
Vlaams Instituut voor de Zee (VLIZ), moredata creator
Instituto Antártico Chileno (INACH), moredata creator
Universidad de Magallanes, moredata creator
Université Libre de Bruxelles (ULB), moredata creator

Dataset status: Completed
Data type: Data
Data origin: Research: experiment
Metadatarecord created: 2025-02-25
Information last updated: 2025-02-26
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy