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IFCB110-SMHI: Imaging flow cytometry from SMHI in Tangesund 2016
Citation
Swedish Meteorological and Hydrological Institute (2018). Imaging flow cytometry from SMHI in Tangesund 2016. https://marineinfo.org/doc/dataset/5840
Contact: Karlson, Bengt ; Brosnahan, Michael
Access data
Archived data
Availability: Creative Commons License This dataset is licensed under a Creative Commons Attribution 4.0 International License.
Description
An imaging flow cytometer, the Imaging FlowCytobot, was used to investigate phytoplankton abundance and diversity in a fjordal system on the Swedish Skagerrak coast. Samples of 5 mL were collected approximately every 25 minutes. An automated winch was used to move the IFCB to different depths. Chlorophyll fluorescence of individual organisms was used to trigger the camera in the instrument. Several thousand images were collected in each sample. Automated image analyses was used to analyse the images produced to identify and count cells of different plankton taxa.
Lineage
Prior to publication data undergo quality control checked which are described in https://github.com/EMODnet/EMODnetBiocheck?tab=readme-ov-file#understanding-the-output
Scope
Themes:
Biology > Plankton > Phytoplankton
Keywords:
Marine/Coastal, Bio-geographical regions, Biota, Environment, Flow cytometry, Geoscientific Information, Habitats and biotopes, Metadata non conformant, Metadata not evaluated, No limitations to public access, Oceans, Sea regions, WGS84 (EPSG:4326), XYZ ASCII, ANE, Skagerrak, EurOBIS calculated BBOX
Geographical coverage
ANE, Skagerrak [Marine Regions]
EurOBIS calculated BBOX Stations
Bounding Box
Coordinates: MinLong: 11,493; MinLat: 58,075 - MaxLong: 11,493; MaxLat: 58,075 [WGS84]
Temporal coverage
9 August 2016 - 16 October 2016
Parameters
Abundance of biological entity specified elsewhere per unit volume of the water body [BODC]
Count (in assayed sample) of biological entity specified elsewhere [BODC]
Sea-floor depth (below mean sea level) {bathymetric depth} [BODC]
Contributors
Swedish Meteorological and Hydrological Institute (SMHI), more, data creator
Karlson, Bengt
Woods Hole Oceanographic Institution (WHOI), more
Brosnahan, Michael
Related datasets
Parent dataset:
JERICO-NEXT: Joint Research Activity Project 1: Phytoplankton Biodiversity, more
Published in:
EurOBIS: European Ocean Biodiversity Information System, more
(Partly) included in:
Presence/Absence maps of phytoplankton in the Greater Baltic Sea, more
URLs
Dataset information:
Other:
Dataset status: Completed
Data type: Data
Data origin: Monitoring: field survey
Release date: 2018-09-25
Metadatarecord created: 2017-11-17
Information last updated: 2025-03-26
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy