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The ocean sampling day consortium
Kopf, A.; Bicak, M.; Kottmann, R.; Schnetzer, J.; Kostadinov, I.; Lehmann, K.; Fernàndez-Guerra, A.; Jeanthon, C.; Rahav, E.; Ullrich, M.; Wichels, A.; Gerdts, G.; Polymenakou, P.; Kotoulas, G.; Siam, R.; Abdallah, R.Z.; Sonnenschein, E.; Cariou, T.; O'Gara, F.; Jackson, S.; Orlic, S.; Steinke, M.; Busch, J.; Duarte, B.; Caçador, I.; Canning-Clode, J.; Marteinsson, V.; Reynisson, E.; Loureiro, C.M.; Luna, G.M.; Quero, G.M.; Löscher, C.R.; Kremp, A.; DeLorenzo, M.E.; Øvreås, L.; Tolman, J.; LaRoche, J.; Penna, A.; Frischer, M.; Davis, T.; Barker, K.; Meyer, C.P.; Ramos, S.; Magalhães, C.; Jude-Lemeilleur, F.; Aguirre-Macedo, M.L.; Wang, S.; Poulton, N.; Jones, S.; Collin, R.; Fuhrman, J.A.; Conan, P.; Alonso, C.; Stambler, N.; Goodwin, K.; Yakimov, M.M.; Baltar, F.; Bodrossy, L.; Van de Kamp, J.; Frampton, D.M.F.; Ostrowski, M.; Van Ruth, P.; Malthouse, P.; Claus, S.; Deneudt, K.; Mortelmans, J.; Pitois, S.; Wallom, D.; Salter, I.; Costa, R.; Schroeder, D.C.; Kandil, M.M.; Amaral, V.; Biancalana, F.; Santana, R.; Pedrotti, M.L.; Yoshida, T.; Ogata, H.; Ingleton, T.; Munnik, K.; Rodriguez-Ezpeleta, N.; Berteaux-Lecellier, V.; Wecker, P.; Cancio, I.; Vaulot, D.; Bienhold, C.; Ghazal, H.; Chaouni, B.; Essayer, S.; Ettamimi, S.; Zaid, E.H.; Boukhatem, N.; Bouali, A.; Chahboune, R.; Barrijal, S.; Timinouni, M.; El Otmani, F.; Bennani, M.; Mea, M.; Todorova, N.; Karamfilov, V.; ten Hoopen, P.; Cochrane, G.; L'Haridon, S.; Bizsel, K.C.; Vezzi, A.; Lauro, F.M.; Martin, P.; Jensen, R.M.; Hinks, J.; Gebbels, S.; Rosselli, R.; De Pascale, F.; Schiavon, R.; dos Santos, A.; Villar, E.; Pesant, S.; Cataletto, B.; Malfatti, F.; Edirisinghe, R.; Herrera Silveira, J.A.; Barbier, M.; Turk, V.; Tinta, T.; Fuller, W.J.; Salihoglu, I.; Serakinci, N.; Ergoren, M.C.; Bresnan, E.; Iriberri, J.; Nyhus, P.A.F.; Bente, E.; Karlsen, H.E.; Golyshin, P.N.; Gasol, J.M.; Moncheva, S.; Dzhembekova, N.; Johnson, Z.; Sinigalliano, C.D.; Gidley, M.L.; Zingone, A.; Danovaro, R.; Tsiamis, G.; Clark, M.S.; Costa, A.C.; El Bour, M.; Martins, A.M.; Collins, R.E.; Ducluzeau, A.-L.; Martinez, J.; Costello, M.J.; Amaral-Zettler, L.A.; Gilbert, J.A.; Davies, N.; Field, D.; Glóckner, F.O. (2015). The ocean sampling day consortium. GigaScience 4: 27. http://dx.doi.org/10.1186/s13742-015-0066-5
In: GigaScience. Oxford Academic: Oxford. e-ISSN 2047-217X, more
Peer reviewed article  
Available in  Authors | Dataset 
Keywords
    Bacteria
    Biodiversity
    Marine
    Standards
Author keywords
    Ocean sampling day; OSD; Genomics; Health Index; Microorganism; Metagenomics; Micro B3
Authors  Top | Dataset 
  • Kopf, A.
  • Bicak, M.
  • Kottmann, R., more
  • Schnetzer, J.
  • Kostadinov, I.
  • Lehmann, K.
  • Fernàndez-Guerra, A.
  • Jeanthon, C.
  • Rahav, E.
  • Ullrich, M.
  • Wichels, A.
  • Gerdts, G.
  • Polymenakou, P.
  • Kotoulas, G.
  • Siam, R.
  • Abdallah, R.Z.
  • Sonnenschein, E.
  • Cariou, T.
  • O'Gara, F.
  • Jackson, S.
  • Orlic, S.
  • Steinke, M.
  • Busch, J.
  • Duarte, B.
  • Caçador, I.
  • Canning-Clode, J.
  • Marteinsson, V.
  • Reynisson, E.
  • Loureiro, C.M.
  • Luna, G.M.
  • Quero, G.M.
  • Löscher, C.R.
  • Kremp, A.
  • DeLorenzo, M.E.
  • Øvreås, L.
  • Tolman, J.
  • LaRoche, J.
  • Penna, A.
  • Frischer, M.
  • Davis, T.
  • Barker, K.
  • Meyer, C.P.
  • Ramos, S.
  • Magalhães, C.
  • Jude-Lemeilleur, F.
  • Aguirre-Macedo, M.L.
  • Wang, S.
  • Poulton, N.
  • Jones, S.
  • Collin, R.
  • Fuhrman, J.A.
  • Conan, P.
  • Alonso, C.
  • Stambler, N.
  • Goodwin, K.
  • Yakimov, M.M.
  • Baltar, F.
  • Bodrossy, L.
  • Van de Kamp, J.
  • Frampton, D.M.F.
  • Ostrowski, M.
  • Van Ruth, P.
  • Malthouse, P.
  • Claus, S., more
  • Deneudt, K., more
  • Mortelmans, J., more
  • Pitois, S.
  • Wallom, D.
  • Salter, I.
  • Costa, R.
  • Schroeder, D.C.
  • Kandil, M.M.
  • Amaral, V.
  • Biancalana, F.
  • Santana, R.
  • Pedrotti, M.L.
  • Yoshida, T.
  • Ogata, H.
  • Ingleton, T.
  • Munnik, K.
  • Rodriguez-Ezpeleta, N.
  • Berteaux-Lecellier, V.
  • Wecker, P.
  • Cancio, I.
  • Vaulot, D.
  • Bienhold, C.
  • Ghazal, H.
  • Chaouni, B.
  • Essayer, S.
  • Ettamimi, S.
  • Zaid, E.H.
  • Boukhatem, N.
  • Bouali, A.
  • Chahboune, R.
  • Barrijal, S.
  • Timinouni, M.
  • El Otmani, F.
  • Bennani, M.
  • Mea, M.
  • Todorova, N.
  • Karamfilov, V.
  • ten Hoopen, P.
  • Cochrane, G.
  • L'Haridon, S.
  • Bizsel, K.C.
  • Vezzi, A.
  • Lauro, F.M.
  • Martin, P., more
  • Jensen, R.M.
  • Hinks, J.
  • Gebbels, S.
  • Rosselli, R.
  • De Pascale, F.
  • Schiavon, R.
  • dos Santos, A.
  • Villar, E.
  • Pesant, S., more
  • Cataletto, B.
  • Malfatti, F.
  • Edirisinghe, R.
  • Herrera Silveira, J.A.
  • Barbier, M.
  • Turk, V.
  • Tinta, T.
  • Fuller, W.J.
  • Salihoglu, I.
  • Serakinci, N.
  • Ergoren, M.C.
  • Bresnan, E.
  • Iriberri, J.
  • Nyhus, P.A.F.
  • Bente, E.
  • Karlsen, H.E.
  • Golyshin, P.N., more
  • Gasol, J.M., more
  • Moncheva, S., more
  • Dzhembekova, N.
  • Johnson, Z.
  • Sinigalliano, C.D.
  • Gidley, M.L.
  • Zingone, A., more
  • Danovaro, R., more
  • Tsiamis, G.
  • Clark, M.S.
  • Costa, A.C.
  • El Bour, M.
  • Martins, A.M.
  • Collins, R.E.
  • Ducluzeau, A.-L.
  • Martinez, J.
  • Costello, M.J., more
  • Amaral-Zettler, L.A.
  • Gilbert, J.A.
  • Davies, N.
  • Field, D.
  • Glóckner, F.O., more
Abstract
    Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
Dataset
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