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Center for Microbial Ecology and Technology (UGent-CMET)
http://www.cmet.ugent.be/
Dutch name: Centrum voor Microbiële Ecologie en Technologie
Parent institute: Universiteit Gent; Faculteit Bio-ingenieurswetenschappen; Vakgroep Biotechnologie (UGent), more

MRG keywords (6) : Aquaculture; Biodiversity; Biotechnology; Ecosystem functioning; Human health; Microbiology
Address:
Coupure Links 653
9000 Gent
Belgium
Tel.: +32-(0)9-264 59 76
Fax: +32-(0)9-264 62 48
 Persons | Publications | Projects | Dataset 
 
Type: Scientific
Persons (9) Top | Publications | Projects | Dataset 
Persons formerly associated with this organization (61)
Abstract:
The center for Microbial Ecology and Technology (CMET) was founded in 1978 and specialises in the study and application of mixed microbial cultures and communities. CMET focuses on the optimal management of these microbial resources (Microbial Resource Management, MRM) enabling the development of novel products and processes to improve the environment and human health in the most sustainable way. More specifically, CMET applies this approach in the fields of applied microbial ecology, functional feed, medical microbial ecology, risk assessment, biomaterials and nanotechnology, water treatment, aquaculture, bio-energy, and soils and sediments.

CMET conducts research on the following marine topics:
  • microbial diversity and activity in deep-marine sediment ecosystems;

  • simulation of the deep-sea biosphere using a continuous high-pressure bioreactor;

  • bioremediation of marine ecosystems.


The center collaborates intensively with several foreign institutes (e.g. Shanghai JiaoTong University, University of Milan, Technical University of Crete and University of Bologna) and participates in the UGent Aquaculture R&D consortium. Furthermore, the group is involved in several European and national marine research projects.
Publications (205) Top | Persons | Projects | Dataset 
    ( 170 peer reviewed ) split up filter
  • Peer reviewed article Lambert, S.; Vercauteren, M.; Catarino, A.I.; Li, Y.; Van Landuyt, J.; Boon, N.; Everaert, G.; De Rijcke, M.; Janssen, C.; Asselman, J. (2024). Aerosolization of micro- and nanoplastics via sea spray: Investigating the role of polymer type, size, and concentration, and potential implications for human exposure. Environ. Pollut. 351: 124105. https://dx.doi.org/10.1016/j.envpol.2024.124105, more
  • Peer reviewed article Li, Y.; Schütte, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M. (2024). The immunostimulatory activity of sea spray aerosols: bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells. Sci. Total Environ. 927: 171969. https://dx.doi.org/10.1016/j.scitotenv.2024.171969, more
  • Peer reviewed article da Silva Junior, E.C.; Babaahmadifooladia, M.; Folens, K.; dos Reis, A.R.; Guilherme, L.R.G.; van de Wiele, T.; Jacxsens, L.; Du Laing, G. (2023). Content, speciation and in vitro bioaccessibility of trace elements in seaweeds and derived food products. J. food compos. anal. (Print) 118: 105162. https://dx.doi.org/10.1016/j.jfca.2023.105162, more
  • Peer reviewed article Defoirdt, T. (2023). Indole signaling, a promising target to control vibriosis in aquaculture. Aquaculture 574: 739692. https://dx.doi.org/10.1016/j.aquaculture.2023.739692, more
  • Peer reviewed article Fu, S.Z.; Wang, R.; Zhang, J.; Xu, Z.; Yang, X.L.; Yang, Q. (2023). Temporal variability of microbiome in the different plankton hosts revealed distinct environmental persistence of Vibrio parahaemolyticus in shrimp farms. Microbiological Research 275: 127464. https://dx.doi.org/10.1016/j.micres.2023.127464, more
  • Peer reviewed article Kundu, K.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Neyts, M.; Parmentier, K.; Boon, N. (2023). Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome. Mar. Pollut. Bull. 190: 114866. https://dx.doi.org/10.1016/j.marpolbul.2023.114866, more
  • Peer reviewed article Lobanov, V.; De Vrieze, J.; Joyce, A. (2023). Simultaneous biomethane production and nutrient remineralization from aquaculture solids. Aquacult. Eng. 101: 102328. https://dx.doi.org/10.1016/j.aquaeng.2023.102328, more
  • Peer reviewed article Ma, L.; Roman, M.; Alhadidi, A.; Jia, M.; Martini, F.; Xue, Y.; Verliefde, A.; Gutierrez, L.; Cornelissen, E. (2023). Fate of organic micropollutants during brackish water desalination for drinking water production in decentralized capacitive electrodialysis. Wat. Res. 245: 120625. https://dx.doi.org/10.1016/j.watres.2023.120625, more
  • Peer reviewed article Zhang, S.; Yang, Q.; Eggermont, M.; Defoirdt, T. (2023). Quorum-sensing interference in vibrios. Reviews in Aquaculture 15(4): 1452-1466. https://dx.doi.org/10.1111/raq.12787, more
  • Peer reviewed article Zhang, S.; Van Haesebroeck, J.; Yang, Q.; Defoirdt, T. (2023). Indole-3-acetic acid increases the survival of brine shrimp challenged with vibrios belonging to the Harveyi clade. J. Fish Dis. 46(5): 477-486. https://dx.doi.org/10.1111/jfd.13759, more
  • Peer reviewed article Zhang, S.; Yang, Q.; Defoirdt, T. (2023). Halogenated indoles decrease the virulence of Vibrio campbellii in a gnotobiotic brine shrimp model. Microbiology Spectrum 10(5): 1-12. https://dx.doi.org/10.1128/spectrum.02689-22, more
  • Peer reviewed article Zhang, X.; Arbour, T.; Zhang, D.; Wei, S.; Rabaey, K. (2023). Microbial electrosynthesis of acetate from CO2 under hypersaline conditions. Environmental Science and Ecotechnology 13: 100211. https://dx.doi.org/10.1016/j.ese.2022.100211, more
  • Peer reviewed article Babaahmadifooladia, M.; da Silva Junior, E.C.; van de Wiele, T.; Du Laing, G.; Jacxsens, L. (2022). Probabilistic chronic dietary exposure assessment adjusted for bioaccessible fraction to metals by consumption of seaweed and derived foods. Food Chemistry 395: 133588. https://dx.doi.org/10.1016/j.foodchem.2022.133588, more
  • Peer reviewed article Ceron-Chafla, P.; García-Timermans, C.; de Vrieze, J.; Ganigué, R.; Boon, N.; Rabaey, K.; van Lier, J.B.; Lindeboom, R.E.F. (2022). Pre-incubation conditions determine the fermentation pattern and microbial community structure in fermenters at mild hydrostatic pressure. Biotechnol. Bioeng. 119(7): 1792-1807. https://dx.doi.org/10.1002/bit.28085, more
  • Peer reviewed article Fu, S.; Wang, Q.; Wang, R.; Zhang, Y.; Lan, R.; He, F.; Yang, Q. (2022). Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment. Sci. Total Environ. 820: 153286. https://dx.doi.org/10.1016/j.scitotenv.2022.153286, more
  • Peer reviewed article Gan, L.; Zheng, J.; Xu, W.-H.; Lin, J.; Liu, J.; Zhang, Y.; Wu, Z.; Lv, Z.; Jia, Y.; Guo, Q.; Chen, S.; Liu, C.; Defoirdt, T.; Qin, Q.; Liu, Y. (2022). Deciphering the virulent Vibrio harveyi causing spoilage in muscle of aquatic crustacean Litopenaeus vannamei. NPG Scientific Reports 12(1): 16296. https://dx.doi.org/10.1038/s41598-022-20565-1, more
  • Peer reviewed article Islam, S.S.; Zhang, S.; Eggermont, M.; Bruto, M.; Le Roux, F.; Defoirdt, T. (2022). The impact of the multichannel quorum sensing systems of Vibrio tasmaniensis and Vibrio crassostreae on virulence towards blue mussel (Mytilus edulis) larvae. Aquaculture 547: 737414. https://dx.doi.org/10.1016/j.aquaculture.2021.737414, more
  • Peer reviewed article Torun, F.; Hostins, B.; De Schryver, P.; Boon, N.; De Vrieze, J. (2022). Molybdate effectively controls sulphide production in a shrimp pond model. Environ. Res. 203: 111797. https://dx.doi.org/10.1016/j.envres.2021.111797, more
  • Peer reviewed article Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Neyts, M.; Parmentier, K.; De Rijcke, M.; Boon, N. (2022). 80 years later: Marine sediments still influenced by an old war ship. Front. Mar. Sci. 9: 1017136. https://dx.doi.org/10.3389/fmars.2022.1017136, more
  • Peer reviewed article Xiong, C.; Calatayud, M.; van de Wiele, T.; Francesconi, K. (2022). Gut microbiota metabolize arsenolipids in a donor dependent way. Ecotoxicol. Environ. Saf. 239: 113662. https://dx.doi.org/10.1016/j.ecoenv.2022.113662, more
  • Peer reviewed article Yang, Q.; Wang, Q.; Wu, J.; Zhang, Y.; Wei, D.; Qu, B.; Liu, Y.; Fu, S. (2022). Distinct dynamics of Vibrio parahaemolyticus populations in two farming models. J. Appl. Microbiol. 133(3): 1146-1155. https://dx.doi.org/10.1111/jam.15217, more
  • Peer reviewed article Zhang, S.; Yang, Q.; Fu, S.; Janssen, C.R.; Eggermont, M.; Defoirdt, T. (2022). Indole decreases the virulence of the bivalve model pathogens Vibrio tasmaniensis LGP32 and Vibrio crassostreae J2-9. NPG Scientific Reports 12(1): 5749. https://dx.doi.org/10.1038/s41598-022-09799-1, more
  • Peer reviewed article Zhang, S.; Yang, Q.; Defoirdt, T. (2022). Indole decreases the virulence of pathogenic vibrios belonging to the Harveyi clade. J. Appl. Microbiol. 132(1): 167-176. https://dx.doi.org/10.1111/jam.15227, more
  • Peer reviewed article Zhang, S.; Yang, Q.; Defoirdt, T. (2022). Indole analogues decreasing the virulence of Vibrio campbellii towards brine shrimp larvae. Microbial biotechnology 15(12): 2917-2928. https://dx.doi.org/10.1111/1751-7915.14160, more
  • Peer reviewed article Dumolin, C.; Peeters, C.; De Canck, E.; Boon, N.; Vandamme, P. (2021). Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units. Microorganisms 9(2): 416. https://dx.doi.org/10.3390/microorganisms9020416, more
  • Peer reviewed article Fu, S.; Ni, P.; Yang, Q.; Hu, H.; Wang, Q.; Ye, S.; Liu, Y. (2021). Delineating the key virulence factors and intraspecies divergence of Vibrio harveyi via whole-genome sequencing. Can. J. Microbiol. 67(3): 231-248. https://hdl.handle.net/10.1139/cjm-2020-0079, more
  • Peer reviewed article Fu, S.; Wang, Q.; Zhang, Y.; Yang, Q.; Hao, J.; Liu, Y.; Pang, B. (2021). Dynamics and microevolution of Vibrio parahaemolyticus populations in shellfish farms. mSystems 6(1): e01161-20. https://hdl.handle.net/10.1128/mSystems.01161-20, more
  • Peer reviewed article Fu, S.; Yang, Q.; Wang, Q.; Pang, B.; Lan, R.; Wei, D.; Qu, B.; Liu, Y. (2021). Continuous genomic surveillance monitored the in vivo evolutionary trajectories of Vibrio parahaemolyticus and identified a new virulent genotype. mSystems 6(1): e01254-20. https://dx.doi.org/10.1128/msystems.01254-20, more
  • Peer reviewed article Göing, S.; Gasperotti, A.F.; Yang, Q.; Defoirdt, T.; Jung, K. (2021). Insights into a pyruvate sensing and uptake system in Vibrio campbellii and its importance for virulence. J. Bacteriol. 203(20): e00296-21. https://dx.doi.org/10.1128/JB.00296-21, more
  • Peer reviewed article Heyse, J.; Props, R.; Kongnuan, P.; De Schryver, P.; Rombaut, G.; Defoirdt, T.; Boon, N. (2021). Rearing water microbiomes in white leg shrimp (Litopenaeus vannamei) larviculture assemble stochastically and are influenced by the microbiomes of live feed products. Environ. Microbiol. 23(1): 281-298. https://hdl.handle.net/10.1111/1462-2920.15310, more
  • Peer reviewed article Heyse, J.; Schattenberg, F.; Rubbens, P.; Müller, S.; Waegeman, W.; Boon, N.; Props, R. (2021). Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting. mSystems 6(5): e00551-21. https://dx.doi.org/10.1128/msystems.00551-21, more
  • Peer reviewed article Kaur-Kahlon, G.; Kumar, B.K.; Ruwandeepika, H.A.D.; Defoirdt, T.; Karunasagar, I. (2021). Quorum sensing regulation of virulence gene expression in Vibrio harveyi during its interaction with marine diatom Skeletonema marinoi. Journal of Pure and Applied Microbiology 15(4): 2507-2519. https://dx.doi.org/10.22207/JPAM.15.4.78, more
  • Peer reviewed article Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W. (2021). PhenoGMM: Gaussian mixture modeling of cytometry data quantifies changes inmicrobial community structure. mSphere 6(1): e00530-20. https://dx.doi.org/10.1128/msphere.00530-20, more
  • Peer reviewed article Rubbens, P.; Props, R.; Kerckhof, F.-M.; Boon, N.; Waegeman, W. (2021). Cytometric fingerprints of gut microbiota predict Crohn’s disease state. ISME J. 15(1): 354-358. https://dx.doi.org/10.1038/s41396-020-00762-4, more
  • Peer reviewed article Rubbens, P.; Props, R. (2021). Computational analysis of microbial flow cytometry data. mSystems 6(1): e00895-20. https://dx.doi.org/10.1128/msystems.00895-20, more
  • Peer reviewed article Vanwijnsberghe, S.; Peeters, C.; De Ridder, E.; Dumolin, C.; Wieme, A.D.; Boon, N.; Vandamme, P. (2021). Genomic aromatic compound degradation potential of novel Paraburkholderia species: Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov. International Journal of Molecular Sciences 22(13): 7003. https://dx.doi.org/10.3390/ijms22137003, more
  • Peer reviewed article Wang, Q.; Zhang, Y.; Yang, Q.; Fu, S.; Qu, B.; Defoirdt, T. (2021). One health pathogen surveillance demonstrated the dissemination of gut pathogens within the two coastal regions associated with intensive farming. Gut Pathogens 13(1): 47. https://dx.doi.org/10.1186/s13099-021-00442-4, more
  • Peer reviewed article Yang, Q.; Fu, S.; Zou, P.; Hao, J.; Wei, D.; Xie, G.; Huang, J. (2021). Coordination of primary metabolism and virulence factors expression mediates the virulence of Vibrio parahaemolyticus towards cultured shrimp (Penaeus vannamei). J. Appl. Microbiol. 131(1): 50-67. https://hdl.handle.net/10.1111/jam.14922, more
  • Peer reviewed article Yang, Q.; Zou, P.; Cao, Z.; Wang, Q.; Fu, S.; Xie, G.; Huang, J. (2021). QseC inhibition as a novel antivirulence strategy for the prevention of Acute Hepatopancreatic Necrosis Disease (AHPND)-causing Vibrio parahaemolyticus. Frontiers in Cellular and Infection Microbiology 10: 594652. https://hdl.handle.net/10.3389/fcimb.2020.594652, more
  • Peer reviewed article Callewaert, C.; Helffer, K.R.; Lebaron, P. (2020). Skin microbiome and its interplay with the environment. American Journal of Clinical Dermatology 21(S1): 4-11. https://hdl.handle.net/10.1007/s40257-020-00551-x, more
  • Peer reviewed article Dumolin, C.; Peeters, C.; Ehsani, E.; Tahon, G.; De Canck, E.; Cnockaert, M.; Boon, N.; Vandamme, P. (2020). Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production. Int. J. Syst. Evol. Microbiol. 70(1): 530-536. https://dx.doi.org/10.1099/ijsem.0.003786, more
  • Peer reviewed article Fu, S.; Wei, D.; Yang, Q.; Xie, G.; Pang, B.; Wang, Y.; Lan, R.; Wang, Q.; Dong, X.; Zhang, X.; Huang, J.; Feng, J.; Liu, Y. (2020). Horizontal plasmid transfer promotes the dissemination of Asian acute hepatopancreatic necrosis disease and provides a novel mechanism for genetic exchange and environmental adaptation. mSystems 5(2): e00799-19. https://hdl.handle.net/10.1128/mSystems.00799-19, more
  • Peer reviewed article García-Timermans, C.; Rubbens, P.; Heyse, J.; Kerckhof, F.-M.; Props, R.; Skirtach, A.G.; Waegeman, W.; Boon, N. (2020). Discriminating bacterial phenotypes at the population and single‐cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting. Cytometry A 97(7): 713-726. https://dx.doi.org/10.1002/cyto.a.23952, more
  • Peer reviewed article Le, D.; Nguyen, P.; Nguyen, D.; Dierckens, K.; Boon, N.; Lacoere, T.; Kerckhof, F.-M.; De Vrieze, J.; Vadstein, O.; Bossier, P. (2020). Gut microbiota of migrating wild rabbit fish (Siganus guttatus) larvae have low spatial and temporal variability. Microb. Ecol. 79: 539-551. https://dx.doi.org/10.1007/s00248-019-01436-1, more
  • Peer reviewed article Van Landuyt, J.; Cimmino, L.; Dumolin, C.; Chatzigiannidou, I.; Taveirne, F.; Mattelin, V.; Zhang, Y.; Vandamme, P.; Scoma, A.; Williamson, A.; Boon, N. (2020). Microbial enrichment, functional characterization and isolation from a cold seep yield piezotolerant obligate hydrocarbon degraders. FEMS Microbiol. Ecol. 96(9): fiaa097. https://dx.doi.org/10.1093/femsec/fiaa097, more
  • Peer reviewed article Wang, Q.; Fu, S.; Yang, Q.; Hao, J.; Zhou, C.; Liu, Y. (2020). The impact of water intrusion on pathogenic Vibrio species to inland brackish waters of China. International Journal of Environmental Research and Public Health 17(18): 6781. https://hdl.handle.net/10.3390/ijerph17186781, more
  • Peer reviewed article Yang, S.; Lv, Y.; Liu, X.; Wang, Y.; Fan, Q.; Yang, Z.; Boon, N.; Wang, F.; Xiao, X.; Zhang, Y. (2020). Genomic and enzymatic evidence of acetogenesis by anaerobic methanotrophic archaea. Nature Comm. 11(1): 11 pp. https://dx.doi.org/10.1038/s41467-020-17860-8, more
  • Peer reviewed article Zou, P.; Yang, Q.; Wang, H.; Xie, G.; Cao, Z.; Chen, X.; Gao, W.; Huang, J. (2020). In vitro disinfection efficacy and clinical protective effects of common disinfectants against acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio isolates in Pacific white shrimp Penaeus vannamei. J. Microbiol. 58(8): 675-686. https://hdl.handle.net/10.1007/s12275-020-9537-1, more
  • Peer reviewed article Czechowska, Kamila; Lannigan, Joanne; Wang, Lili; Arcidiacono, Judith; Ashhurst, Thomas M.; Barnard, Ruth M.; Bauer, Steven; Bispo, Cláudia; Bonilla, Diana L.; Brinkman, Ryan R.; Cabanski, Maciej; Chang, Hyun‐Dong; Chakrabarti, Lina; Chojnowski, Grace; Cotleur, Bunny; Degheidy, Heba; Dela Cruz, Gelo V.; Eck, Steven; Elliott, John; Errington, Rachel; Filby, Andy; Gagnon, Dominic; Gardner, Rui; Green, Cherie; Gregory, Michael; Groves, Christopher J.; Hall, Christopher; Hammes, Frederik; Hedrick, Michael; Hoffman, Robert; Icha, Jaroslav; Ivaska, Johanna; Jenner, Dominic C.; Jones, Derek; Kerckhof, Frederiek‐Maarten; Kukat, Christian; Lanham, David; Leavesley, Silas; Lee, Michael; Lin‐Gibson, Sheng; Litwin, Virginia; Liu, Yanli; Molloy, Jenny; Moore, Jonni S.; Müller, Susann; Nedbal, Jakub; Niesner, Raluca; Nitta, Nao; Ohlsson‐Wilhelm, Betsy; Paul, Nicole E.; Perfetto, Stephen; Portat, Ziv; Props, Ruben; Radtke, Stefan; Rayanki, Radhika; Rieger, Aja; Rogers, Samson; Rubbens, Peter; Salomon, Robert; Schiemann, Matthias; Sharpe, John; Sonder, Soren Ulrik; Stewart, Jennifer J.; Sun, Yongliang; Ulrich, Henning; Van Isterdael, Gert; Vitaliti, Alessandra; Vreden, Caryn; Weber, Michael; Zimmermann, Jakob; Vacca, Giacomo; Wallace, Paul; Tárnok, Attila (2019). Cyt‐Geist: current and future challenges in cytometry: reports of the CYTO 2018 conference workshops. Cytometry A 95(6): 598-644. https://dx.doi.org/10.1002/cyto.a.23777, more
  • Peer reviewed article Defoirdt, T. (2019). Amino acid–derived quorum sensing molecules controlling the virulence of vibrios (and beyond). PLoS Pathog. 15(7): e1007815. https://dx.doi.org/10.1371/journal.ppat.1007815, more
  • Peer reviewed article Eggermont, M.; Cornillie, P.; Nevejan, N.; Bossier, P.; Dierick, M.; Adriaens, D.; Sorgeloos, P.; Defoirdt, T.; Declercq, A.M. (2019). Hemolymph extraction sites and 3d-visualization of the cardiovascular system and related structures of the blue mussel (Mytilus edulis). Isj-Invertebrate Survival Journal 16: 202-202, more
  • Peer reviewed article Ehsani, E.; Dumolin, C.; Arends, J.B.A.; Kerckhof, F.-M.; Hu, X.; Vandamme, P.; Boon, N. (2019). Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria. Appl. Microbiol. Biotechnol. 103(19): 8241-8253. https://dx.doi.org/10.1007/s00253-019-10082-z, more
  • Peer reviewed article Fu, S.; Hao, J.; Yang, Q.; Lan, R.; Wang, Y.; Ye, S.; Liu, Y.; Li, R. (2019). Long-distance transmission of pathogenic Vibrio species by migratory waterbirds: a potential threat to the public health. NPG Scientific Reports 9: 16303. https://dx.doi.org/10.1038/s41598-019-52791-5, more
  • Peer reviewed article Heyse, J.; Buysschaert, B.; Props, R.; Rubbens, P.; Skirtach, A.G.; Waegeman, W.; Boon, N. (2019). Coculturing bacteria leads to reduced phenotypic heterogeneities. Appl. Environ. Microbiol. 85(8): e02814-18. https://dx.doi.org/10.1128/aem.02814-18, more
  • Peer reviewed article Muthukrishnan, S.; Defoirdt, T.; Ina-Salwany, M.Y.; Yusoff, F.M.; Shariff, M.; Ismail, S.I.; Natrah, I. (2019). Vibrio parahaemolyticus and Vibrio harveyi causing Acute Hepatopancreatic Necrosis Disease (AHPND) in Penaeus vannamei (Boone, 1931) isolated from Malaysian shrimp ponds. Aquaculture 511: 734227. https://dx.doi.org/10.1016/j.aquaculture.2019.734227, more
  • Peer reviewed article Nguyen, B.; Rubbens, P.; Kerckhof, F.-M.; Boon, N.; De Baets, B.; Waegeman, W. (2019). Learning single‐cell distances from cytometry data. Cytometry A 95(7): 782-791. https://dx.doi.org/10.1002/cyto.a.23792, more
  • Peer reviewed article Noor, N.M.; Defoirdt, T.; Alipiah, N.; Karim, M.; Daud, H.; Natrah, I. (2019). Quorum sensing is required for full virulence of Vibrio campbellii towards tiger grouper (Epinephelus fuscoguttatus) larvae. J. Fish Dis. 42(4): 489-495. https://dx.doi.org/10.1111/jfd.12946, more
  • Peer reviewed article Rubbens, P.; Schmidt, M.L.; Props, R.; Biddanda, B.A.; Boon, N.; Waegeman, W.; Denef, V.J. (2019). Randomized Lasso links microbial taxa with aquatic functional groups inferred from flow cytometry. mSystems 4(5): e00093-19. https://dx.doi.org/10.1128/msystems.00093-19, more
  • Peer reviewed article Scoma, A.; Heyer, R.; Rifai, R.; Dandyk, C.; Marshall, I.; Kerckhof, F.-M.; Marietou, A.; Boshker, H.T.S.; Meysman, F.J.R.; Malmos, K.G.; Vosegaard, T.; Vermeir, P.; Banat, I.M.; Benndorf, D.; Boon, N. (2019). Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities. ISME J. 13(4): 1004-1018. https://dx.doi.org/10.1038/s41396-018-0324-5, more
  • Peer reviewed article Calatayud, M.; Xiong, C.; Du Laing, G.; Raber, G.; Francesconi, K.; Van de Wiele, T. (2018). Salivary and gut microbiomes play a significant role in in vitro oral bioaccessibility, biotransformation, and intestinal absorption of arsenic from food. Environ. Sci. Technol. 52(24): 14422-14435. https://dx.doi.org/10.1021/acs.est.8b04457, more
  • Peer reviewed article Daghio, M.; Vaiopoulou, E.; Aulenta, F.; Sherry, A.; Head, I.; Franzetti, A.; Rabaey, K. (2018). Anode potential selection for sulfide removal in contaminated marine sediments. J. Hazard. Mater. 360: 498-503. https://dx.doi.org/10.1016/j.jhazmat.2018.08.016, more
  • Peer reviewed article De Bodt, J.; Defoirdt, T. (2018). Impact of the organic load on the efficacy of chlorine disinfection against acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus. J. Fish Dis. 41(10): 1609-1612. https://dx.doi.org/10.1111/jfd.12866, more
  • Peer reviewed article Defoirdt, T.; Anh, N.T.M.; De Schryver, P. (2018). Virulence-inhibitory activity of the degradation product 3-hydroxybutyrate explains the protective effect of poly-β-hydroxybutyrate against the major aquaculture pathogen Vibrio campbellii. NPG Scientific Reports 8: 7245. https://dx.doi.org/10.1038/s41598-018-25385-w, more
  • Peer reviewed article Dominguez-Benetton, X.; Varia, J.C.; Pozo, G.; Modin, O.; Ter Heijne, A.; Fransaer, J.; Rabaey, K. (2018). Metal recovery by microbial electro-metallurgy. Progress in Materials Science 94: 435-461. https://dx.doi.org/10.1016/j.pmatsci.2018.01.007, more
  • Peer reviewed article García-Timermans, C.; Rubbens, P.; Kerckhof, F.-M.; Buysschaert, B.; Khalenkow, D.; Waegeman, W.; Skirtach, A.G.; Boon, N. (2018). Label-free Raman characterization of bacteria calls for standardized procedures. J. microbiol. methods 151: 69-75. https://dx.doi.org/10.1016/j.mimet.2018.05.027, more
  • Peer reviewed article Kuuliala, L.; Al Hage, Y.; Ioannidis, A.-G.; Sader, M.; Kerckhof, F.-M.; Vanderroost, M.; Boon, N.; De Baets, B.; De Meulenaer, B.; Ragaert, P.; Devlieghere, F. (2018). Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres. Food Microbiol. 70: 232-244. https://dx.doi.org/10.1016/j.fm.2017.10.011, more
  • Peer reviewed article Li, X.; Dierckens, K.; Bossier, P.; Defoirdt, T. (2018). The impact of quorum sensing on the virulence of Vibrio anguillarum towards gnotobiotic sea bass (Dicentrarchus labrax) larvae. Aquac. Res. 49(11): 3686-3689. https://dx.doi.org/10.1111/are.13821, more
  • Peer reviewed article Props, R.; Rubbens, P.; Besmer, M.; Buysschaert, B.; Sigrist, J.; Weilenmann, H.; Waegeman, W.; Boon, N.; Hammes, F. (2018). Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data. Wat. Res. 145: 73-82. https://dx.doi.org/10.1016/j.watres.2018.08.013, more
  • Peer reviewed article Cheyns, K.; Waegeneers, N.; Van de Wiele, T.; Ruttens, A. (2017). Arsenic release from foodstuffs upon food preparation. J. Agric. Food Chem. 65(11): 2443-2453. https://dx.doi.org/10.1021/acs.jafc.6b05721, more
  • Peer reviewed article De Swaef, E.; Demeestere, K.; Boon, N.; Van Den Broeck, W.; Haesebrouck, F.; Decostere, A. (2017). Development of a reliable experimental set-up for Dover sole larvae Solea solea L. and exploring the possibility of implementing this housing system in a gnotobiotic model. Research in Veterinary Science 115: 418-424. https://dx.doi.org/10.1016/j.rvsc.2017.07.025, more
  • Peer reviewed article Decostere, B.; Coppens, J.; Vervaeren, H.; Vlaeminck, S.E.; De Gelder, L.; Boon, N.; Nopens, I.; Van Hulle, S.W.H. (2017). Kinetic exploration of intracellular nitrate storage in marine microalgae. Journal of Environmental Science and Health Part A-Toxic/Hazardous Substances & Environmental Engineering 52(14): 1303-1311. https://dx.doi.org/10.1080/10934529.2017.1364921, more
  • Peer reviewed article Defoirdt, T.; Vlaeminck, S.E.; Sun, X.; Boon, N.; Clauwaert, P. (2017). Ureolytic activity and its regulation in Vibrio campbellii and Vibrio harveyi in relation to nitrogen recovery from human urine. Environ. Sci. Technol. 51(22): 13335-13343. https://dx.doi.org/10.1021/acs.est.7b03829, more
  • Peer reviewed article Eggermont, M.; Bossier, P.; Pande, G.S.J.; Delahaut, V.; Rayhan, A.M.; Gupta, N.; Islam, S.S.; Yumo, E.; Nevejan, N.; Sorgeloos, P.; Gomez-Gil, B.; Defoirdt, T. (2017). Isolation of Vibrionaceae from wild blue mussel (Mytilus edulis) adults and their impact on blue mussel larviculture. FEMS Microbiol. Ecol. 93(4): fix039. https://dx.doi.org/10.1093/femsec/fix039, more
  • Peer reviewed article Nuzzo, A.; Hosseinkhani, B.; Boon, N.; Zanaroli, G.; Fava, F. (2017). Impact of bio-palladium nanoparticles (bio-Pd NPs) on the activity and structure of a marine microbial community. Environ. Pollut. 220(Part B): 1068-1078. https://dx.doi.org/10.1016/j.envpol.2016.11.036, more
  • Peer reviewed article Props, R.; Kerckhof, F.-M.; Rubbens, P.; De Vrieze, J.; Hernandez Sanabria, E.; Waegeman, W.; Monsieurs, P.; Hammes, F.; Boon, N. (2017). Absolute quantification of microbial taxon abundances. ISME J. 11(2): 584-587. https://dx.doi.org/10.1038/ismej.2016.117, more
  • Peer reviewed article Rubbens, P.; Props, R.; Boon, N.; Waegeman, W. (2017). Flow cytometric single-cell identification of populations in synthetic bacterial communities. PLoS One 12(1): e0169754. https://dx.doi.org/10.1371/journal.pone.0169754, more
  • Peer reviewed article Rubbens, P.; Props, R.; Garcia-Timermans, C.; Boon, N.; Waegeman, W. (2017). Stripping flow cytometry: how many detectors do we need for bacterial identification? Cytometry A 91(12): 1184-1191. https://dx.doi.org/10.1002/cyto.a.23284, more
  • Peer reviewed article Scoma, A.; Yakimov, M.M.; Daffonchio, D.; Boon, N. (2017). Self-healing capacity of deep-sea ecosystems affected by petroleum hydrocarbons: understanding microbial oil degradation at hydrocarbon seeps is key to sustainable bioremediation protocols. Embo Reports 18(6): 868-872. https://dx.doi.org/10.15252/embr.201744090, more
  • Peer reviewed article Scoma, A.; Coma, M.; Kerckhof, F.-M.; Boon, N.; Rabaey, K. (2017). Efficient molasses fermentation under high salinity by inocula of marine and terrestrial origin. Biotechnology for Biofuels 10: 17 pp. https://dx.doi.org/10.1186/s13068-017-0701-8, more
  • Peer reviewed article Suong, N.T.; Van Hao, N.; Van Sang, N.; Hung, N.D.; Tinh, N.T.N.; Phuoc, L.H.; Cuong, D.V.; Luan, N.T.; Phuong, D.V.; Thom, T.T.; Thao, P.H.; Bossier, P.; Sorgeloos, P.; Defoirdt, T. (2017). The impact of catecholamine sensing on the virulence of Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease (AHPND). Aquaculture 470: 190-195. https://dx.doi.org/10.1016/j.aquaculture.2016.12.030, more
  • Peer reviewed article van de Velde, S.; Callebaut, I.; Gao, Y.; Meysman, F.J.R. (2017). Corrigendum to “Impact of electrogenic sulfur oxidation on trace metal cycling in a coastal sediment” [CHEMGE: 452 (5 March 2017); pages 9-23]. Chem. Geol. 471: 166-166. https://dx.doi.org/10.1016/j.chemgeo.2017.10.001, more
  • Peer reviewed article van de Velde, S.; Callebaut, I.; Gao, Y.; Meysman, F.J.R. (2017). Impact of electrogenic sulfur oxidation on trace metal cycling in a coastal sediment. Chem. Geol. 452: 9-23. https://dx.doi.org/10.1016/j.chemgeo.2017.01.028, more
  • Peer reviewed article Viggi, C.C.; Matturro, B.; Frascadore, E.; Insogna, S.; Mezzi, A.; Kaciulis, S.; Sherry, A.; Mejeha, O.K.; Head, I.M.; Vaiopoulou, E.; Rabaey, K.; Rossetti, S.; Aulenta, F. (2017). Bridging spatially segregated redox zones with a microbial electrochemical snorkel triggers biogeochemical cycles in oil-contaminated River Tyne (UK) sediments. Wat. Res. 127: 11-21. https://dx.doi.org/10.1016/j.watres.2017.10.002, more
  • Peer reviewed article Barbato, M.; Scoma, A.; Mapelli, F.; De Smet, R.; Banat, I.M.; Daffonchio, D.; Boon, N.; Borin, S. (2016). Hydrocarbonoclastic Alcanivorax isolates exhibit different physiological and expression responses to n-dodecane. Front. Microbiol. 7: 14 pp. https://dx.doi.org/10.3389/fmicb.2016.02056, more
  • Peer reviewed article Coppens, J.; Lindeboom, R.; Muys, M.; Coessens, W.; Alloul, A.; Meerbergen, K.; Lievens, B.; Clauwaert, P.; Boon, N.; Vlaeminck, S.E. (2016). Nitrification and microalgae cultivation for two-stage biological nutrient valorization from source separated urine. Bioresour. Technol. 211: 41-50. https://dx.doi.org/10.1016/j.biortech.2016.03.001, more
  • Peer reviewed article Courtens, E.N.P.; Spieck, E.; Vilchez-Vargas, R.; Bodé, S.; Boeckx, P.; Schouten, S.; Jáuregui, R.; Pieper, D.H.; Vlaeminck, S.E.; Boon, N. (2016). A robust nitrifying community in a bioreactor at 50°C opens up the path for thermophilic nitrogen removal. ISME J. 10: 2293–2303. https://dx.doi.org/10.1038/ismej.2016.8, more
  • Peer reviewed article Daghio, M.; Vaiopoulou, E.; Patil, S.A.; Suarez-Suarez, A.; Head, I.; Franzetti, A.; Rabaey, K. (2016). Anodes stimulate anaerobic toluene degradation via sulfur cycling in marine sediments. Appl. Environ. Microbiol. 82(1): 297-307. https://dx.doi.org/10.1128/AEM.02250-15, more
  • Peer reviewed article Defoirdt, T. (2016). Implications of ecological niche differentiation in marine bacteria for microbial management in aquaculture to prevent bacterial disease. PLoS Pathog. 12(11): e1005843. https://dx.doi.org/10.1371/journal.ppat.1005843, more
  • Peer reviewed article Ho, A.; Angel, R.; Veraart, A.J.; Daebeler, A.; Jia, Z.; Kim, S.Y.; Kerckhof, F.-M.; Boon, N.; Bodelier, P.L.E. (2016). Biotic interactions in microbial communities as modulators of biogeochemical processes: methanotrophy as a model system. Front. Microbiol. 7: 11. https://dx.doi.org/10.3389/fmicb.2016.01285, more
  • Peer reviewed article Props, R.; Monsieurs, P.; Mysara, M.; Clement, L.; Boon, N. (2016). Measuring the biodiversity of microbial communities by flow cytometry. Methods Ecol. Evol. 7(11): 1376-1385. https://dx.doi.org/10.1111/2041-210x.12607, more
  • Peer reviewed article Schaeck, M.; Duchateau, L.; Van Den Broeck, W.; Van Trappen, S.; De Vos, P.; Coulombet, C.; Boon, N.; Haesebrouck, F.; Decostere, A. (2016). Vibrio lentus protects gnotobiotic sea bass (Dicentrarchus labrax L.) larvae against challenge with Vibrio harveyi. Vet. Microbiol. 185: 41-48. https://dx.doi.org/10.1016/j.vetmic.2016.01.024, more
  • Peer reviewed article Schaeck, M.; De Swaef, E.; Van Den Broeck, W.; Van Nevel, S.; Boon, N.; De Geyter, N.; Morent, R.; Demeestere, K.; Duchateau, L.; Coulombet, C.; Haesebrouck, F.; Decostere, A. (2016). Germ-free sea bass Dicentrarchus labrax larval model: a valuable tool in the study of host-microbe interactions. Dis. Aquat. Org. 117(3): 177-185. dx.doi.org/10.3354/dao02950, more
  • Peer reviewed article Scoma, A.; Barbato, M.; Hernandez-Sanabria, E.; Mapelli, F.; Daffonchio, D.; Borin, S.; Boon, N. (2016). Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria? NPG Scientific Reports 6: 23526. dx.doi.org/10.1038/srep23526, more
  • Peer reviewed article Scoma, A.; Yakimov, M.M.; Boon, N. (2016). Challenging oil bioremediation at deep-sea hydrostatic pressure. Front. Microbiol. 7(1203): 8 pp. https://dx.doi.org/10.3389/fmicb.2016.01203, more
  • Peer reviewed article Scoma, A.; Barbato, M.; Borin, S.; Daffonchio, D.; Boon, N. (2016). An impaired metabolic response to hydrostatic pressure explains Alcanivorax borkumensis recorded distribution in the deep marine water column. NPG Scientific Reports 6(31316): 13 pp. https://dx.doi.org/10.1038/srep31316, more
  • Peer reviewed article Scoma, A.; Boon, N. (2016). Osmotic stress confers enhanced cell integrity to hydrostatic pressure but impairs growth in Alcanivorax borkumensis SK2. Front. Microbiol. 7. dx.doi.org/10.3389/fmicb.2016.00729, more
  • Peer reviewed article Van den Hende, S.; Claessens, L.; De Muylder, E.; Boon, N.; Vervaeren, H. (2016). Microalgal bacterial flocs originating from aquaculture wastewater treatment as diet ingredient for Litopenaeus vannamei (Boone). Aquac. Res. 47(4): 1075-1089. https://dx.doi.org/10.1111/are.12564, more
  • Peer reviewed article Vanoppen, M.; Stoffels, G.; Buffel, J.; De Gusseme, B.; Verliefde, A.R.D. (2016). A hybrid IEX-RO process with brine recycling for increased RO recovery without chemical addition: a pilot-scale study. Desalination 394: 185-194. https://dx.doi.org/10.1016/j.desal.2016.05.003, more
  • Peer reviewed article Vekeman, B.; Kerckhof, F.-M.; Cremers, G.; de Vos, P.; Vandamme, P.; Boon, N.; Op den Camp, H.J.M.; Heylen, K. (2016). New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase. Environ. Microbiol. 18(12): 4523-4536. http://dx.doi.org/10.1111/1462-2920.13485, more
  • Peer reviewed article Hosseinkhani, B.; Nuzzo, A.; Zanaroli, G.; Fava, F.; Boon, N. (2015). Assessment of catalytic dechlorination activity of suspended and immobilized bio-Pd NPs in different marine conditions. Appl. Catal. B. 168-169: 62-67. https://dx.doi.org/10.1016/j.apcatb.2014.12.014, more
  • Peer reviewed article Li, X.; Bossier, P.; Dierckens, K.; Laureau, S.; Defoirdt, T. (2015). Impact of mucin, bile salts and cholesterol on the virulence of Vibrio anguillarum towards gnotobiotic sea bass (Dicentrarchus labrax) larvae. Vet. Microbiol. 175(1): 44-49. https://dx.doi.org/10.1016/j.vetmic.2014.10.033, more
  • Peer reviewed article Najdegerami, H; Baruah, K.; Shiri, A.; Rekecki, A.; Van Den Broeck, W.; Sorgeloos, P.; Boon, N.; Bossier, P.; De Schryver, P. (2015). Siberian sturgeon (Acipenser baerii) larvae fed Artemia nauplii enriched with poly-beta-hydroxybutyrate (PHB): effect on growth performance, body composition, digestive enzymes, gut microbial community, gut histology and stress tests. Aquac. Res. 46(4): 801-812. dx.doi.org/10.1111/are.12231, more
  • Peer reviewed article Yang, Q.; Defoirdt, T. (2015). Quorum sensing positively regulates flagellar motility in pathogenic Vibrio harveyi. Environ. Microbiol. 17(4): 960-968. https://dx.doi.org/10.1111/1462-2920.12420, more
  • Peer reviewed article Bagchi, S.; Vlaeminck, S.E.; Mosquera, M.; Neufeld, J.D.; Boon, N. (2014). Temporal and spatial stability of ammonia-oxidizing Archaea and Bacteria in aquarium biofilters. PLoS One 9(12): e113515. https://dx.doi.org/10.1371/journal.pone.0113515, more
  • Peer reviewed article Coppens, J.; Decostere, B.; Van Hulle, S.; Nopens, I.; Vlaeminck, S.E.; De Gelder, L.; Boon, N. (2014). Kinetic exploration of nitrate-accumulating microalgae for nutrient recovery. Appl. Microbiol. Biotechnol. 98(19): 8377-8387. https://dx.doi.org/10.1007/s00253-014-5854-9, more
  • Peer reviewed article Hosseinkhani, B.; Hennebel, T.; Van Nevel, S.; Verschuere, S.; Yakimov, M.M.; Cappello, S.; Blaghen, M.; Boon, N. (2014). Biogenic Nanopalladium based remediation of chlorinated hydrocarbons in marine environments. Environ. Sci. Technol. 48(1): 550-557. dx.doi.org/10.1021/es403047u, more
  • Peer reviewed article Hosseinkhani, B.; Hennebel, T.; Boon, N. (2014). Potential of biogenic hydrogen production for hydrogen driven remediation strategies in marine environments. N. Biotechnol. 31(5): 445-450. https://dx.doi.org/10.1016/j.nbt.2014.04.005, more
  • Peer reviewed article Li, X.; Yang, Q.; Dierckens, K.; Milton, L; Defoirdt, T. (2014). RpoS and indole signaling control the virulence of Vibrio anguillarum towards gnotobiotic sea bass (Dicentrarchus labrax) larvae. PLoS One 9(10): -. dx.doi.org/10.1371/journal.pone.0111801, more
  • Peer reviewed article Niu, Y.; Defoirdt, T.; Baruah, K.; Van de Wiele, T.; Dong, L; Bossier, P. (2014). Bacillus sp. LT3 improves the survival of gnotobiotic brine shrimp (Artemia franciscana) larvae challenged with Vibrio campbellii by enhancing the innate immune response and by decreasing the activity of shrimp-associated vibrios. Vet. Microbiol. 173(3-4): 279-288. dx.doi.org/10.1016/j.vetmic.2014.08.007, more
  • Peer reviewed article Wang, F.; Zhang, Y.; Chen, Y.; He, Y.; Qi, J.; Hinrichs, K.; Zhang, X.; Xiao, X.; Boon, N. (2014). Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways. ISME J. 8(5): 1069-1078. https://dx.doi.org/10.1038/ismej.2013.212, more
  • Peer reviewed article Zhang, Y.; Maignien, L.; Stadnitskaia, A.; Boeckx, P.; Xiao, X.; Boon, N. (2014). Stratified community responses to methane and sulfate supplies in mud volcano deposits: insights from an in vitro experiment. PLoS One 9(11): e113004. dx.doi.org/10.1371/journal.pone.0113004, more
  • Peer reviewed article Barreiro, D.L.; Zamalloa, C.; Boon, N.; Vyverman, W.; Ronsse, F.; Brilman, W.; Prins, W. (2013). Influence of strain-specific parameters on hydrothermal liquefaction of microalgae. Bioresour. Technol. 146: 463-471. https://dx.doi.org/10.1016/j.biortech.2013.07.123, more
  • Peer reviewed article Daffonchio, D.; Ferrer, M.; Mapelli, F.; Cherif, A.; Lafraya, A.; Malkawi, H.I.; Yakimov, M.M.; Abdel-Fattah, Y.R.; Blaghen, M.; Golyshin, P.N.; Kalogerakis, N.; Boon, N.; Magagnini, M.; Fava, F. (2013). Bioremediation of Southern Mediterranean oil polluted sites comes of age. N. Biotechnol. 30(6): 743-748. dx.doi.org/10.1016/j.nbt.2013.05.006, more
  • Peer reviewed article Endebu, M.; Miah, F.; Boon, N.; Catania, F.; Bossier, P.; Van Stappen, G. (2013). Historic occurrence of parthenogenetic Artemia in Great Salt Lake, USA, as demonstrated by molecular analysis of field samples. J. Great Lakes Res. 39(1): 47-55. dx.doi.org/10.1016/j.jglr.2012.12.017, more
  • Peer reviewed article Harter, T.; Bossier, P.; Verreth, J.; Bodé, S.; Van der Ha, D.; Debeer, A.-E.; Boon, N.; Boeckx, P.; Vyverman, W.; Nevejan, N. (2013). Carbon and nitrogen mass balance during flue gas treatment with Dunaliella salina cultures. J. Appl. Phycol. 25(2): 359-368. dx.doi.org/10.1007/s10811-012-9870-9, more
  • Peer reviewed article Maignien, L.; Parkes, R.J.; Cragg, B.; Niemann, H.; Knittel, K.; Coulon, S.; Akhmetzhanov, A.; Boon, N. (2013). Anaerobic oxidation of methane in hypersaline cold seep sediments. FEMS Microbiol. Ecol. 83(1): 214-231. dx.doi.org/10.1111/j.1574-6941.2012.01466.x, more
  • Peer reviewed article Pande, G.; Natrah, F.M.I.; Sorgeloos, P.; Bossier, P.; Defoirdt, T. (2013). The Vibrio campbellii quorum sensing signals have a different impact on virulence of the bacterium towards different crustacean hosts. Vet. Microbiol. 167(3-4): 540-545. https://dx.doi.org/10.1016/j.vetmic.2013.08.021, more
  • Peer reviewed article Vadstein, O.; Bergh, O.; Gatesoupe, F.J.; Galindo-Villegas, J.; Mulero, V.; Picchietti, S.; Scapigliati, G.; Makridis, P.; Olsen, Y.; Dierckens, K.; Defoirdt, T.; Boon, N.; De Schryver, P.; Bossier, P. (2013). Microbiology and immunology of fish larvae. Reviews in Aquaculture 5(S1): S1-S25. dx.doi.org/10.1111/j.1753-5131.2012.01082.x, more
  • Peer reviewed article Daffonchio, D.; Mapelli, F.; Cherif, A.; Malkawi, H.I.; Yakimov, M.M.; Abdel-Fattah, Y.R.; Blaghen, M.; Golyshin, P.N.; Ferrer, M.; Kalogerakis, N.; Boon, N.; Magagnini, M.; Fava, F. (2012). ULIXES, unravelling and exploiting Mediterranean Sea microbial diversity and ecology for xenobiotics’ and pollutants’ clean up. Reviews in Environmental Science and Bio/Technology 11(3): 207-211. http://dx.doi.org/10.1007/s11157-012-9283-x, more
  • Peer reviewed article Hoefman, S.; Van der Ha, D.; De Vos, P.; Boon, N.; Heylen, K. (2012). Miniaturized extinction culturing is the preferred strategy for rapid isolation of fast-growing methane-oxidizing bacteria. Microbial biotechnology 5(3): 368-378. https://dx.doi.org/10.1111/j.1751-7915.2011.00314.x, more
  • Peer reviewed article Natrah, F.M.I.; Alam, M.I.; Pawar, S.; Harzevili, A.S.; Nevejan, N.; Boon, N.; Sorgeloos, P.; Bossier, P.; Defoirdt, T. (2012). The impact of quorum sensing on the virulence of Aeromonas hydrophila and Aeromonas salmonicida towards burbot (Lota lota L.) larvae. Vet. Microbiol. 159(1-2): 77-82. https://dx.doi.org/10.1016/j.vetmic.2012.03.014, more
  • Peer reviewed article Niu, Y.; Defoirdt, T.; Rekecki, A.; De Schryver, P.; Van Den Broeck, W.; Dong, S.; Sorgeloos, P.; Boon, N.; Bossier, P. (2012). A method for the specific detection of resident bacteria in brine shrimp larvae. J. microbiol. methods 89(1): 33-37. https://dx.doi.org/10.1016/j.mimet.2012.02.004, more
  • Peer reviewed article Rekecki, A.; Gunasekara, R.A.Y.S.A.; Dierckens, K.; Laureau, S.; Boon, N.; Favoreel, H.; Cornelissen, M.; Sorgeloos, P.; Ducatelle, R.; Bossier, P.; Van Den Broeck, W. (2012). Bacterial host interaction of GFP-labelled Vibrio anguillarum HI-610 with gnotobiotic sea bass, Dicentrarchus labrax (L.), larvae. J. Fish Dis. 35(4): 265-273. http://dx.doi.org/10.1111/j.1365-2761.2011.01342.x, more
  • Peer reviewed article Zamalloa, C.; De Vrieze, J.; Boon, N.; Verstraete, W. (2012). Anaerobic digestibility of marine microalgae Phaeodactylum tricornutum in a lab-scale anaerobic membrane bioreactor. Appl. Microbiol. Biotechnol. 93(2): 859-869. dx.doi.org/10.1007/s00253-011-3624-5, more
  • Peer reviewed article Zamalloa, C.; Boon, N.; Verstraete, W. (2012). Anaerobic digestibility of Scenedesmus obliquus and Phaeodactylum tricornutum under mesophilic and thermophilic conditions. Appl. Energy 92: 733-738. https://dx.doi.org/10.1016/j.apenergy.2011.08.017, more
  • Peer reviewed article De Gusseme, B.; Hennebel, T.; Vanhaecke, L.; Soetaert, M.; Desloover, J.; Wille, K.; Verbeken, K.; Verstraete, W.; Boon, N. (2011). Biogenic Palladium enhances diatrizoate removal from hospital wastewater in a microbial electrolysis cell. Environ. Sci. Technol. 45(13): 5737–5745. http://dx.doi.org/10.1021/es200702m, more
  • Peer reviewed article De Schryver, P.; Dierckens, K.; Bahn Thi, Q.Q.; Amalia, R.; Marzorati, M.; Bossier, P.; Boon, N.; Verstraete, W. (2011). Convergent dynamics of the juvenile European sea bass gut microbiota induced by poly-β-hydroxybutyrate. Environ. Microbiol. 13(4): 1042-1051. http://dx.doi.org/10.1111/j.1462-2920.2010.02410.x, more
  • Peer reviewed article Defoirdt, T.; Thanh, L.D.; Van Delsen, B.; De Schryver, P.; Sorgeloos, P.; Boon, N.; Bossier, P. (2011). N-acylhomoserine lactone-degrading Bacillus strains isolated from aquaculture animals. Aquaculture 311(1-4): 258-260. https://dx.doi.org/10.1016/j.aquaculture.2010.11.046, more
  • Peer reviewed article Maignien, L.; Depreiter, D.; Foubert, A.; Reveillaud, J.; De Mol, L.; Boeckx, P.; Blamart, D.; Henriet, J.-P.; Boon, N. (2011). Anaerobic oxidation of methane in a cold-water coral carbonate mound from the Gulf of Cadiz. Int. J. Earth Sci. 100(6): 1413-1422. dx.doi.org/10.1007/s00531-010-0528-z, more
  • Peer reviewed article Ruwandeepika, H.; Defoirdt, T.; Bhowmick, P.; Karunasagar, I.; Bossier, P. (2011). Expression of virulence genes in luminescent and nonluminescent isogenic vibrios and virulence towards gnotobiotic brine shrimp (Artemia franciscana). J. Appl. Microbiol. 110(2): 399-406. dx.doi.org/10.1111/j.1365-2672.2010.04892.x, more
  • Peer reviewed article Ruwandeepika, H.; Defoirdt, T.; Bhowmick, P.; Karunasagar, I.; Karunasagar, I.; Bossier, P. (2011). In vitro and in vivo expression of virulence genes in Vibrio isolates belonging to the Harveyi clade in relation to their virulence towards gnotobiotic brine shrimp (Artemia franciscana). Environ. Microbiol. 13(2): 506-517. http://dx.doi.org/10.1111/j.1462-2920.2010.02354.x, more
  • Peer reviewed article Van Rooij, D.; Blamart, D.; De Mol, L.; Mienis, F.; Pirlet, H.; Wehrmann, L. M.; Barbieri, R.; Maignien, L.; Templer, S. P.; de Haas, H.; Hebbeln, D.; Frank, N.; Larmagnat, S.; Stadnitskaia, A.; Stivaletta, N.; van Weering, T.; Zhang, Y.; Hamoumi, N.; Cnudde, V.; Duyck, P.; Henriet, J.-P.; The MiCROSYSTEMS MD 169 Shipboard Party (2011). Cold-water coral mounds on the Pen Duick Escarpment, Gulf of Cadiz: The MiCROSYSTEMS project approach. Mar. Geol. 282(1-2): 102-117. dx.doi.org/10.1016/j.margeo.2010.08.012, more
  • Peer reviewed article Wehrmann, L.M.; Templer, S.P.; Brunner, B.; Bernasconi, S.M.; Maignien, L.; Ferdelman, T.G. (2011). The imprint of methane seepage on the geochemical record and early diagenetic processes in cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz. Mar. Geol. 282(1-2): 118-137. dx.doi.org/10.1016/j.margeo.2010.08.005, more
  • Peer reviewed article Zhang, Y.; Arends, J.B.A.; Van de Wiele, T.; Boon, N. (2011). Bioreactor technology in marine microbiology: from design to future application. Biotechnol. Adv. 29(3): 312-321. http://dx.doi.org/10.1016/j.biotechadv.2011.01.004, more
  • Peer reviewed article Zhang, Y.; Maignien, L.; Zhao, X.; Wang, F.; Boon, N. (2011). Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor. BMC Microbiol. 11: 137. https://dx.doi.org/10.1186/1471-2180-11-137, more
  • Peer reviewed article Crab, R.; Lambert, A.; Defoirdt, T.; Bossier, P.; Verstraete, W. (2010). The application of bioflocs technology to protect brine shrimp (Artemia franciscana) from pathogenic Vibrio harveyi. J. Appl. Microbiol. 109(5): 1643-1649. dx.doi.org/10.1111/j.1365-2672.2010.04791.x, more
  • Peer reviewed article De Schamphelaire, L.; Boeckx, P.; Verstraete, W. (2010). Evaluation of biocathodes in freshwater and brackish sediment microbial fuel cells. Appl. Microbiol. Biotechnol. 87(5): 1675-1687. dx.doi.org/10.1007/s00253-010-2645-9, more
  • Peer reviewed article De Schryver, P.; Sinha, A.K.; Kunwar, P.S.; Baruah, K.; Verstraete, W.; Boon, N.; De Boeck, G.; Bossier, P. (2010). Poly-ß-hydroxybutyrate (PHB) increases growth performance and intestinal bacterial range-weighted richness in juvenile European sea bass, Dicentrarchus labrax. Appl. Microbiol. Biotechnol. 86(5): 1535-1541. http://dx.doi.org/10.1007/s00253-009-2414-9, more
  • Peer reviewed article Defoirdt, T.; Ruwandeepika, H.; Karunasagar, I.; Boon, N.; Bossier, P. (2010). Quorum sensing negatively regulates chitinase in Vibrio harveyi. Environmental Microbiology Reports 2(1): 44-49. https://dx.doi.org/10.1111/j.1758-2229.2009.00043.x, more
  • Peer reviewed article Liu, Y.; De Schryver, P.; Van Delsen, B.; Maignien, L.; Boon, N.; Sorgeloos, P.; Verstraete, W.; Bossier, P.; Defoirdt, T. (2010). PHB-degrading bacteria isolated from the gastrointestinal tract of aquatic animals as protective actors against luminescent vibriosis. FEMS Microbiol. Ecol. 74(1): 196-204. dx.doi.org/10.1111/j.1574-6941.2010.00926.x, more
  • Peer reviewed article Van Rooij, D.; De Mol, L.; Blamart, D.; Mienis, F.; Wehrmann, L.M.; Barbieri, R.; Maignien, L.; Templer, S.P.; de Haas, H.; Henriet, J.-P.; The MiCROSYSTEMS Science Team (2010). Integrated research on the Pen Duick cold-water coral mounds: the MiCROSYSTEMS approach. Geophys. Res. Abstr. 12(4787), more
  • Peer reviewed article Zhang, Y.; Henriet, J.-P.; Bursens, J.; Boon, N. (2010). Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor. Bioresour. Technol. 101(9): 3132-3138. dx.doi.org/10.1016/j.biortech.2009.11.103, more
  • Peer reviewed article Dang, T.V.C.; Nguyen, V.H.; Dierckens, K.; Defoirdt, T.; Boon, N.; Sorgeloos, P.; Bossier, P. (2009). Novel approach of using homoserine lactone-degrading and poly-beta-hydroxybutyrate-accumulating bacteria to protect Artemia from the pathogenic effects of Vibrio harveyi. Aquaculture 291(1-2): 23-30. dx.doi.org/10.1016/j.aquaculture.2009.03.009, more
  • Peer reviewed article De Schryver, P.; Verstraete, W. (2009). Nitrogen removal from aquaculture pond water by heterotrophic nitrogen assimilation in lab-scale sequencing batch reactors. Bioresour. Technol. 100(3): 1162-1167. dx.doi.org/10.1016/j.biortech.2008.08.043, more
  • Peer reviewed article Dierckens, K.; Rekecki, A.; Laureau, S.; Sorgeloos, P.; Boon, N.; Van Den Broeck, W.; Bossier, P. (2009). Development of a bacterial challenge test for gnotobiotic sea bass (Dicentrarchus labrax) larvae. Environ. Microbiol. 11(2): 526-533. dx.doi.org/10.1111/j.1462-2920.2008.01794.x, more
  • Peer reviewed article Erguder, T.H.; Boon, N.; Wittebolle, L.; Marzorati, M.; Verstraete, W. (2009). Environmental factors shaping the ecological niches of ammonia-oxidizing archaea. FEMS Microbiol. Rev. 33(5): 855-869. http://dx.doi.org/10.1111/j.1574-6976.2009.00179.x, more
  • Peer reviewed article Maignien, L.; Boon, N.; RV James Cook JC10 Shipboard (2009). Environmental constrains on microbial methane oxidation activity and community structure in Gulf of Cadiz mud volcanoes. Geochim. Cosmochim. Acta 73(13): A819-A819, more
  • Peer reviewed article Qi, Z.; Dierckens, K.; Defoirdt, T.; Sorgeloos, P.; Boon, N.; Bao, Z.; Bossier, P. (2009). Effects of feeding regime and probionts on the diverting microbial communities in rotifer Brachionus culture. Aquacult. Int. 17(4): 303-315. dx.doi.org/10.1007/s10499-008-9202-x, more
  • Peer reviewed article Qi, Z.; Dierckens, K.; Defoirdt, T.; Sorgeloos, P.; Boon, N.; Bao, Z.; Bossier, P. (2009). Analysis of the evolution of microbial communities associated with different cultures of rotifer strains belonging to different cryptic species of the Brachionus plicatilis species. Aquaculture 292(1-2): 23-29. dx.doi.org/10.1016/j.aquaculture.2009.03.030, more
  • Peer reviewed article Qi, Z.Z.; Zhang, X.H.; Boon, N.; Bossier, P. (2009). Probiotics in aquaculture of China - Current state, problems and prospect. Aquaculture 290(1-2): 15-21. dx.doi.org/10.1016/j.aquaculture.2009.02.012, more
  • Peer reviewed article Rekecki, A.; Dierckens, K.; Laureau, S.; Boon, N.; Bossier, P.; Van Den Broeck, W. (2009). Effect of germ-free rearing environment on gut development of larval sea bass (Dicentrarchus labrax L.). Aquaculture 293(1-2): 8-15. dx.doi.org/10.1016/j.aquaculture.2009.04.001, more
  • Peer reviewed article Sung, Y.; Dhaene, T.; Defoirdt, T.; Boon, N.; MacRae, T.; Sorgeloos, P.; Bossier, P. (2009). Ingestion of bacteria overproducing DnaK attenuates Vibrio infection of Artemia franciscana larvae. Cell Stress Chap. 14(6): 603-609. https://dx.doi.org/10.1007/s12192-009-0112-2, more
  • Peer reviewed article Wehrmann, L.M.; Templer, S.P.; Maignien, L.; Bernasconi, S.M.; Brunner, B.; Ferdelman, T.G. (2009). The imprint of methane seepage on geochemical processes in cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz. Geochim. Cosmochim. Acta 73(13): A1424-A1424, more
  • Peer reviewed article Zhang, Y.; Maignien, L.; Verstraete, W.; Henriet, J.-P.; Boon, N. (2009). Simulation of the deep-sea biosphere by a continuous high-pressure bioreactor. Geophys. Res. Abstr. 11(1065), more
  • Peer reviewed article Brackman, G.; Defoirdt, T.; Miyamoto, C.; Bossier, P.; Van Calenbergh, S.; Nelis, H.J.; Coenye, T. (2008). Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR. BMC Microbiol. 8. dx.doi.org/10.1186/1471-2180-8-149, more
  • Peer reviewed article De Schryver, P.; Crab, R.; Defoirdt, T.; Boon, N.; Verstraete, W. (2008). The basics of bio-flocs technology: the added value for aquaculture. Aquaculture 277(3-4): 125-137. dx.doi.org/10.1016/j.aquaculture.2008.02.019, more
  • Peer reviewed article Defoirdt, T.; Boon, N.; Sorgeloos, P.; Verstraete, W.; Bossier, P. (2008). Quorum sensing and quorum quenching in Vibrio harveyi: lessons learned from in vivo work. ISME J. 2(1): 19-26. dx.doi.org/10.1038/ismej.2007.92, more
  • Peer reviewed article Defoirdt, T.; Verstraete, W.; Bossier, P. (2008). Luminescence, virulence and quorum sensing signal production by pathogenic Vibrio campbellii and Vibrio harveyi isolates. J. Appl. Microbiol. 104(5): 1480-1487. dx.doi.org/10.1111/j.1365-2672.2007.03672.x, more
  • Peer reviewed article Crab, R.; Avnimelech, Y.; Defoirdt, T.; Bossier, P.; Verstraete, W. (2007). Nitrogen removal techniques in aquaculture for a sustainable production. Aquaculture 270(1-4): 1-14. dx.doi.org/10.1016/j.aquaculture.2007.05.006, more
  • Peer reviewed article Maignien, L.; Depreiter, D.; Foubert, A.; Boon, N.; Verstraete, W.; Henriet, J.-P. (2007). Biogeochemistry of carbonate mounds from the Pen Duick escarpment in the Gulf of Cadiz. Geophys. Res. Abstr. 9: 08287, more
  • Peer reviewed article Defoirdt, T.; Halet, D.; Sorgeloos, P.; Bossier, P.; Verstraete, W. (2006). Short-chain fatty acids protect gnotobiotic Artemia franciscana from pathogenic Vibrio campbellii. Aquaculture 261(2): 804-808. dx.doi.org/10.1016/j.aquaculture.2006.06.038, more
  • Peer reviewed article Henriet, J.P.; Hamoumi, N.; Ivanov, M.; Pinheiro, L.; Suzyumov, A.; Swennen, R.; Blinova, V.; Bouimetarhan, I.; De Boever, E.; Depreiter, D.; Foubert, A.; Kozlova, E.; Maignien, L.; Poort, J.; Van Rensbergen, P.; Van Rooij, D. (2006). The mud volcano province on the Atlantic Moroccan margin: Towards a natural laboratory for joint European-Maghreb research, in: CIESM Fluid seepages - mud volcanism in the Mediterranean and adjacent domains, Bologna, 19-22 October 2005. CIESM Workshop Monographs, 29: pp. 21-26, more
  • Peer reviewed article Maignien, L.; Foubert, A.; Depreiter, D.; Boon, N.; Blamart, D.; Verstraete, W.; Henriet, J.-P. (2006). Biogeochemical evidence for anoxic oxidation of methane occurrences in the juvenile carbonate mounds from the Gulf of Cadiz. Geophys. Res. Abstr. 8: 06630, more
  • Peer reviewed article Marques, A.; Thanh, T.H.; Verstraete, W.; Dhont, J.; Sorgeloos, P.; Bossier, P. (2006). Use of selected bacteria and yeast to protect gnotobiotic Artemia against different pathogens. J. Exp. Mar. Biol. Ecol. 334(1): 20-30. dx.doi.org/10.1016/j.jembe.2006.01.007, more
  • Peer reviewed article Seurinck, S.; Verdievel, M.; Verstraete, W.; Siciliano, S.D. (2006). Identification of human fecal pollution sources in a coastal area: a case study at Oostende (Belgium). Journal of Water and Health 4(2): 167-175. https://dx.doi.org/10.2166/wh.2006.0014, more
  • Peer reviewed article Defoirdt, T.; Boon, N.; Bossier, P.; Verstraete, W. (2004). Disruption of bacterial quorum sensing: an unexplored strategy to fight infections in aquaculture. Aquaculture 240(1-4): 69-88. dx.doi.org/10.1016/j.aquaculture.2004.06.031, more
  • Peer reviewed article Rombaut, G.; Grommen, R.; Zizhong, Q.; Vanhoof, V.; Suantika, G.; Dhert, P.; Sorgeloos, P.; Verstraete, W. (2003). Improved performance of an intensive rotifer culture system by using a nitrifying inoculum (ABIL). Aquac. Res. 34(2): 165-174. dx.doi.org/10.1046/j.1365-2109.2003.00798.x, more
  • Peer reviewed article Dhert, P.; Rombaut, G.; Suantika, G.; Sorgeloos, P. (2001). Advancement of rotifer culture and manipulation techniques in Europe. Aquaculture 200(1-2): 129-146. dx.doi.org/10.1016/S0044-8486(01)00697-4, more
  • Peer reviewed article Rombaut, G.; Suantika, G.; Boon, N.; Maertens, S.; Dhert, P.; Top, E.; Sorgeloos, P.; Verstraete, W. (2001). Monitoring of the evolving diversity of the microbial community present in rotifer cultures. Aquaculture 198(3-4): 237-252. dx.doi.org/10.1016/S0044-8486(01)00594-4, more
  • Peer reviewed article Suantika, G.; Dhert, P.; Rombaut, G.; Vandenberghe, J.; De Wolf, T.; Sorgeloos, P. (2001). The use of ozone in a high density recirculation system for rotifers. Aquaculture 201(1-2): 35-49. dx.doi.org/10.1016/S0044-8486(01)00532-4, more
  • Lambert, S.; Vercauteren, M.; Catarino, A.I.; Li, Y.; Van Landuyt, J.; Boon, N.; Everaert, G.; De Rijcke, M.; Janssen, C.; Asselman, J. (2024). Transfer of micro- and nanoplastics via sea spray aerosols and estimate of human exposure, in: SETAC Europe 34th Annual Meeting, 5–9 May 2024, Seville, Spain: Abstract Book. pp. 492, more
  • Li, Y.; Schütte, W.; Van Beeck, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M. (2024). Immune receptor- and transcription factor-stimulatory effects of bacteria and endotoxin in sea spray aerosols on human cells, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 33, more
  • Martin, B.; Boon, N.; De Troch, M. (2024). Copepod guts, a new world in marine sediments?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, 6 March 2024, Oostende. VLIZ Special Publication, 91: pp. 17, more
  • Schütte, W.; Van Landuyt, J.; Strehse, J.; Bünning, T.H.; Van Haelst, S.; Parmentier, K.; Maser, E.; Boon, N.; De Rijcke, M. (2024). Bacterial clues of shipwreck TNT pollution in the North Sea, in: SETAC Europe 34th Annual Meeting, 5–9 May 2024, Seville, Spain: Abstract Book. pp. 766, more
  • De Rijcke, M.; Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Neyts, M.; Parmentier, K.; Boon, N. (2023). Microbial community responses to a wartime wreck: the John Mahn case study, in: North Sea Wrecks Project, Steering Group Meeting 13, Bremerhaven, 18 April 2023. , more
  • Boes, E.; Van Landuyt, J.; Kundu, K.; Visser, J.; Mattelin, V.; Missiaen, T. (2022). Shallow gas at the Paardenmarkt WWI munition dumpsite, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 37, more
  • Lambert, S.; Vercauteren, M.; Van Landuyt, J.; Liu, Z.; Diopere, E.; Boon, N.; Janssen, C.R.; Asselman, J. (2022). Do we inhale aerosolized microplastics on the beach?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 59, more
  • Mattelin, V. (2022). Integration of taxonomic and phenotypic fingerprints of marine plastic degrading communities: Extended abstract: Brilliant Marine Research Idea 2021. Ghent University: Gent. 3 pp., more
  • Mattelin, V.; Van Landuyt, J.; Boon, N. (2022). Integration of taxonomic and phenotypic fingerprints of marine plastic degrading communities, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 6, more
  • Rombouts, A. (2022). The role of Alcanivorax in marine plastic biodegradation. MSc Thesis. Universiteit Gent: Gent. 98 pp., more
  • Rombouts, A.; Van Landuyt, J.; Mattelin, V.; Boon, N. (2022). Marine plastic biodegradation: what is Alcanivorax’s role?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 2 March 2022. VLIZ Special Publication, 88: pp. 25, more
  • Herweyers, R.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Laduron, F.; Geukens, K.; Kundu, K.; Boon, N. (2021). Can we track the possible influence of chemical warfare agents on microbial community in the marine environment?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 14-15, more
  • Herweyers, R.; Van Landuyt, J.; Mattelin, V.; Martin, B.; Laduron, F.; Geukens, K.; Kundu, K.; Boon, N. (2021). Can we track the possible influence of chemical warfare agents on microbial community in the marine environment?, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 67-68, more
  • Heyse, J.; Props, R.; Kongnuan, P.; De Schryver, P.; Rombaut, G.; Defoirdt, T.; Boon, N. (2021). Microbiomes of live feed products have an important contribution to the rearing water microbiomes in Litopenaeus vannamei larviculture, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 69, more
  • Martin, B. (2021). Microbial monitoring and degradation of the explosive TNT at a WW1 munition dumpsite before the Belgian coast. Ir Thesis. Ghent University: Gent. 74 pp., more
  • Martin, B.; Van Landuyt, J.; Mattelin, V.; Herweyers, R.; Neyts, M.; Parmentier, K.; Kundu, K.; Boon, N. (2021). Spying bacteria for dumped World War I munition at the coast of Knokke-Heist, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 83-84, more
  • Pluym, T. (2021). Probing microbial activity: One cell at a time. Ir Thesis. Ghent University: Gent. 102 pp., more
  • Pluym, T.; Van Landuyt, J.; Boon, N.; Props, R. (2021). Probing the single-cell activity of Alcanivorax venustensis during deep-sea oil degradation, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 3 March 2021. VLIZ Special Publication, 87: pp. 95, more
  • Van Landuyt, J.; Kundu, K.; Van Haelst, S.; Parmentier, K.; De Rijcke, M.; Boon, N. (2021). How a WW2 shipwreck still influences the surrounding sediment 70 years later, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day, Online event 3 March 2021. VLIZ Special Publication, 85: pp. 21, more
  • Devriese, L.I.; Pirlet, H.; Nauwynck, H.; Janssen, C.; Boon, N.; Arends, J.B.A.; Maelfait, H.; Rubbens, P.; Vandegehuchte, M.; Verleye, T.; Lescrauwaet, A.-K.; Mees, J. (2020). Fact Check. Wetenschappelijke kennis over het coronavirus SARS-CoV-2 in de context van de Vlaamse stranden. VLIZ Beleidsinformerende Nota's, 2020_003. Vlaams Instituut voor de Zee (VLIZ): Oostende. ISBN 9789492043948. 25 pp., more
  • Van Landuyt, J. (2020). Cold seep enrichment yields piezotolerant, obligate hydrocarbon degraders, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Oostende, Belgium, 18 March 2020. VLIZ Special Publication, 84: pp. 84, more
  • De Baere, K.; Van Haelst, S.; Luyckx, D.; De Baere, S.; Boon, N.; van Halbeek, S.; Meskens, R.; Willemen, R.; Melchers, R. (2019). Corrosion of steel and other wreckage in the Belgian North Sea, in: Corrosion and Prevention Conference 2019, Melbourne, Australia, 24 - 27 November, 2019. , more
  • García-Timermans, C.; Rubbens, P.; Kerckhof, F.M.; Waegeman, W.; Boon, N. (2019). Fingerprinting microbial communities through flow cytometry and Raman spectroscopy, in: BAGECO 15. 15th Symposium on Bacterial Genetics and Ecology: "Ecosystem drivers in a changing planet", 26–30 May 2019, Lisbon/Portugal. pp. 155, more
  • Taveirne, F. (2018). Enrichment and isolation of deep-sea hydrocarbon degrading microorganisms. Ir Thesis. Ghent University: Ghent. 82 pp., more
  • Burdorf, L.; Hidalgo-Martinez, S.; van de Velde, S.; Meysman, F.J.R. (2017). Cable bacteria protect coastal waters from toxic nightmares, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 10, more
  • Otalora, P.; Geelhoed, J.; Hidalgo-Martinez, S.; Burdorf, L.; Meysman, F. (2017). Diversity and natural distribution of electricity-generating cable bacteria in the seafloor, in: Mees, J. et al. Book of abstracts – VLIZ Marine Science Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 72, more
  • Otálora-Rodríguez, P.; Geelhoed, J.; Hidalgo-Martinez, S.; Burdorf, L.; Meysman, F. (2017). Diversity and natural distribution of electricity-generating cable bacteria in the seafloor. Poster presented at the VLIZ Marine Science Day 3 March 2017. Center for Microbial Ecology and Technology, Ghent University/Department of Analytical, Environmental and Geo-Chemistry, Vrije Universiteit Brussel: Gent, Brussel. 1 poster pp., more
  • Scoma, A. (2017). The “Alcanivorax paradox”: mild hydrostatic pressure impacts deep-sea oil bioremediation, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 3 March 2017. VLIZ Special Publication, 79: pp. 127-129, more
  • Rifai, R.M. (2016). Study of piezophilic bacteria in biodegradation of Triacontane (C30H62), in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Marine Scientist Day. Brugge, Belgium, 12 February 2016. VLIZ Special Publication, 75: pp. 149, more
  • Vanoppen, M.; Criel, E.; Andersen, S.; Prévoteau, A.; Verliefde, A.R.D. (2016). Assisted reverse electrodialysis: a novel technique to decrease reverse osmosis energy demand, in: AMTA/AWWA membrane technology conference: papers. pp. 1-12, more
  • Scoma, A.; Rifai, R.; Hernandez-Sanabria, E.; Kerckhof, F.M.; Boon, N. (2015). Long-chain hydrocarbon degraders from deep-sea, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 115, more
  • Vekeman, B.; Wille, J.; Boon, N.; De Vos, P.; Heylen, K. (2015). Exploring the diversity of methane-oxidizing bacteria in marine ecosystems, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 20 February 2015. VLIZ Special Publication, 71: pp. 146, more
  • Scoma, A.; Vilchez-Vargas, R.; Barbato, M.; Mapelli, F.; Borin, S.; Daffonchio, D.; Boon, N. (2014). Microbial piezophysiology: which role for high pressure in oil degradation?, in: Mees, J. et al. (Ed.) Book of abstracts – VLIZ Young Scientists’ Day. Brugge, Belgium, 7 March 2014. VLIZ Special Publication, 67: pp. 94, more
  • Henriet, J.-P.; Foubert, A.; Maignien, L.; Proposals 573-Light and 673-Pre2 Teams and Expedition 307 Shipboard Party (2006). Atlantic carbonate mounds: challenges for ocean drilling, from Porcupine to the Morocco Margin, in: Akhmanov, G. et al. (Ed.) (2001). Geological processes on deep-water European margins, International Conference and Ninth Post-Cruise Meeting of the Training-Through-Research Programme, Devoted to the TTR 10th Anniversary, Moscow-Mozhenka, Russia 28 January-2 February 2001. IOC Workshop Report, 175: pp. 24-25, more
  • Foubert, A.; Maignien, L.; Beck, T.; Depreiter, D.; Blamart, D.; Henriet, J.-P. (2005). Pen Duick escarpment on the Moroccan margin: a new mound lab?, in: Hamoumi, N. et al. (Ed.) Geosphere-Biosphere coupling processes: the TTR interdisciplinary approach towards studies of the European and North African margins, International conference and Post-Cruise meeting of the Training-Through-Research programme, Marrakech, Morocco, 2-5 February 2005. IOC Workshop Report, 197: pp. 17, more
Projects (13) Top | Persons | Publications | Dataset 
  • COCARDE: COld-water CArbonate Reservoir systems in Deep Environments, more
  • Diepzee Archaea en bacteria: microbiële ecologie en functionaliteit in carbonaatophopingen in de Golf van Cadiz, more
  • DISARM: Dumpsites of munitions: Integrated Science Approach to Risk and Management, more
  • Disruption of quorum sensing in order to prevent and cure aquatic disease, more
  • Management van de kwaliteit van zwemwater aan de Belgische kust, more
  • Marine@Ugent: UGent Marine Sciences Center of Excellence, more
  • MICROSYSTEMS: Microbial Diversity and Functionality in Cold-Water Coral Reef Ecosystems, more
  • Natural and genetically enhanced biodegradation of alkylphenol polyethoxylates (APnEO's) in aquatic environments, more
  • Perifyton en Biovlok: een geïntegreerd systeem voor de verwijdering van nutriënten en simultane productie van visvoeder in de aquacultuur, more
  • Perifyton: een geïntegreerd systeem voor de verwijdering van nutriënten en simultane productie van visvoeder in de aquacultuur, more
  • PROMICROBE: Microbes as positive actors for more sustainable aquaculture, more
  • SUNLIGHT: Lipid-based, high value products and renewable energy from microalgae, more
  • Verontreiniging met fecale kiemen van strandwater, more
Dataset Top | Persons | Publications | Projects 
  • Li, Y.; Schütte, W.; Dekeukeleire, M.; Janssen, C.; Boon, N.; Asselman, J.; Lebeer, S.; Spacova, I.; De Rijcke, M.; Flanders Marine Institute (VLIZ); University of Antwerp; Ghent University: Belgium; (2024): Immune receptor- and transcription factor-stimulatory activity of bacteria and endotoxin in sea spray aerosols on human cells. Marine Data Archive., more
All data in the Integrated Marine Information System (IMIS) is subject to the VLIZ privacy policy Top | Persons | Publications | Projects | Dataset